Cucurbita maxima (winter squash): 111493950
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Entry
111493950 CDS
T05246
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111493950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111493950
Spliceosome [BR:
cmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111493950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_DCAF4
NBCH_WD40
ANAPC4_WD40
Beta-prop_TEP1_C
PRP4
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
WD40_like
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
111493950
NCBI-ProteinID:
XP_022999661
UniProt:
A0A6J1KDQ7
LinkDB
All DBs
Position
Unknown
AA seq
570 aa
AA seq
DB search
MDVDDQNPASTAAESPEILPGGENEDLDNPAEPMQPAATTVIPSSIVPSIAPIPPPLITR
PLAPLPSRPLLFRPPVAQNGEMRTSDSDSEHDELAPSRATQGSTAEYEVSEESRQVRERQ
EKAMQEFLMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRSIMARLDAE
GQLEKLLKVHEEEEAAATGGTEEAEEEVLQYPFYTEGPKALLDARIDIAKYSIVRAASRL
ERAKRKRDDPDEDVEAEMDWALRQAESLILDCSEIGDDRPLSGCSFSSDGKFLATSSLSG
VAKMWSMPQVRKVSNFKGHTERVTDVIFSPVNECLATASADRTARLWSAEGSLLRTFEGH
LDRLARIAFHPSGKYLGTTSFDKTWRLWDIETGVELLLQEGHSRSVYGIDFHHDGSLVSS
CGLDALARVWDLRTGRSVLALEGHVKPVLGVNFSPNGYHLATGGEDNTCRIWDLRKKKSL
YIIPAHSNLISQVKYEPQEGYFLVTASFDMTAKIWSARDFKPVKTLSGHEAKVTSLDIIS
DGQCIATVSHDRTIKLWSVNSKDEQTMDVD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgatgatcaaaaccctgcatcaactgctgcggaatctcctgaaatccttcct
ggtggtgaaaatgaggatcttgataatccagcagaaccaatgcaacctgcagctacaaca
gttattccatcttcaattgtgccttccattgctcccatcccccctcctctaattacacgt
ccattggctcctcttccgagccgacctctcctcttcaggccccctgtagcacaaaatggg
gagatgagaacaagtgactctgactcagaacacgatgaattggctccttcccgtgccact
caaggttcaactgcagaatatgaggtatcagaagagagcagacaggtaagagagcgtcag
gaaaaagccatgcaggaatttctgatgaagcgccgtgcttctgctctagcagtacctact
aatgacatggctgttcgagcccgtcttcgtcgtcttggtgaacccataactctttttgga
gaaagagaaatggaaaggcgggataggttgcgatcaataatggcacgtttagatgctgaa
gggcaattagagaagctgttgaaagttcatgaagaagaggaggctgcagctactggtgga
actgaggaggctgaggaagaagtgcttcagtatcctttttatactgaggggcccaaggct
ctcttggatgcaagaattgatattgcaaaatattcgatcgtaagagcagcttcacgtctg
gagcgtgctaagaggaaaagggatgatccagatgaagatgtggaagctgaaatggattgg
gctctgaggcaggctgaaagtttgattctggactgcagtgagataggagatgatcgacca
ctttctggttgctctttctcgtctgatggaaaattccttgccactagttcattaagtgga
gttgcgaaaatgtggagcatgcctcaagtaaggaaggtttccaactttaagggacacaca
gagcgggttactgatgtaatattttctccagtgaatgagtgtttagcaactgcctctgct
gaccgaactgcaaggttgtggtctgctgaagggtctctccttagaacatttgagggccat
ctggaccgccttgcacggattgccttccacccatcaggtaagtacttgggcaccactagc
tttgacaagacgtggagattatgggacattgaaactggtgtggagttgcttcttcaagaa
ggtcatagtagaagtgtttatggcatagacttccaccatgatggatctttagtatcatct
tgtggacttgatgcacttgctcgtgtttgggaccttcgaactggcagaagtgttcttgcc
ttagaaggccacgtcaagccagtccttggagttaatttttcacccaatggttatcattta
gctactggtggtgaagataacacctgtcggatatgggatttaaggaagaaaaaatctctt
tatataatacctgcacactcaaaccttatttcacaggtgaaatatgagcctcaagaggga
tacttcttggtaactgcatcatttgatatgactgcaaagatttggtctgctcgtgatttt
aagcctgtgaagacactctctggccacgaagcaaaagtgacatctttggatataatttca
gatggacagtgtattgcaactgtctcgcacgatcggaccataaagctctggtctgtgaat
agcaaagatgaacaaactatggacgttgattga
DBGET
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