Cucurbita maxima (winter squash): 111494259
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Entry
111494259 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111494259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111494259
03041 Spliceosome [BR:
cmax03041
]
111494259
03009 Ribosome biogenesis [BR:
cmax03009
]
111494259
03016 Transfer RNA biogenesis [BR:
cmax03016
]
111494259
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111494259
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111494259
Spliceosome [BR:
cmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111494259
Complex C
U4/U6.U5 tri-SnRNP related factors
111494259
Ribosome biogenesis [BR:
cmax03009
]
Eukaryotic type
Pre-60S particles
Helicases
111494259
Transfer RNA biogenesis [BR:
cmax03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111494259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111494259
NCBI-ProteinID:
XP_022999924
UniProt:
A0A6J1KGY1
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MGSSKRKVGQNVPRESSPKHHKANAPAMVEDEPVACVHDVSYPEGSFNPLPSLSLPSTGG
KLEPAKVFPFSLDPFQSEAIKCLENGESVMVSAHTSAGKTVVASYAIAMSLRNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVTREVAW
IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDFRPTPLQHYVFPSGGEGLYLVVDEKGHFREDSFQKALNALVPASDGDKKKENGKWQKS
LTLGKTGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMARLDLNGDDEKASIET
IFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT
ETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEK
LEPSTAKMMLKGNADCLNSAFHLSYNMLLNQIRCEDGDPENLLRNSFYQFQADRNIPNLE
KQVKTLEEERDSIVIEEEDSLKNYYDLLKQYKSLKKDIHDIVLSPRYCLPFLQPGRLVSI
ECNRYDVNSSTFSIKDQVTWGLMINFQRVKGVSEEDISMKPESANYTVDVLTRCVVSKDA
IGKKTVKIVQLKEHGEPHVVSIPISQISTLAGIRILIPNDLLPLETRENTLKKISEVLSR
FPKGVPLLDPEEDMKIQSSSYRKAVRRTEALENLFDKHEVAKSTLVEQKLKALHLKQELT
AKIRSIKKTMRSSSALAFKDELKARKRVLRRLGCITSDDVVELKGKVACEISSANELTLS
ELMLNGVFNDTKVEELISLLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLEC
KVEIDVEGFVNSFRADIMEVVYGWAKGSKFYEIMEITQVFEGSLVRAIRRLEEVLQQLIV
AAKAIGETELETKFEEAVSKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggctcttcgaagagaaaagtgggtcaaaatgtgcccagagaatcttcgccgaagcac
cacaaagctaatgcccctgccatggttgaagacgaaccagttgcgtgtgttcatgacgtg
tcctaccccgagggttcatttaatcctctcccatcattgagtctcccttcgactggaggg
aagttggaaccggctaaggtgttccctttctctctggacccctttcagtctgaggctatc
aagtgcttagagaatggagaatctgtcatggtatctgctcatacatcagctggtaaaact
gtagtggcgtcgtatgcaattgcaatgtctcttcggaataaacagcgtgtcatatatacg
tcaccgataaaggccctcagcaaccaaaaatatagggaatttaaggaagaattctcggat
gttggtttaatgactggggatgtaacaattgaaccaaatgcttcttgtctggtcatgacc
acagaaatttggcgtagcatgcagtacaaaggatcagaggtaacacgggaagtggcatgg
attatttttgatgaagtacattacatgcgtgatcgggagcgaggtgttgtttgggaagag
agcattgtcatggctccaaagaatgctcgatttgtcttcctctcagcaactgtaccaaat
gcaaaagaatttgctgactgggttgcaaaggtccaccaacaaccatgtcatattgtttat
actgactttcgaccaacacctcttcaacactatgttttcccatccgggggtgaaggctta
tatttggtggttgatgaaaagggacattttcgtgaagatagctttcaaaaagctttaaat
gcacttgtccctgctagtgatggtgacaagaaaaaggagaatgggaagtggcagaagagt
ttaactttgggcaaaactggcgaagagagtgatatatttaagatggtgaagatgataatt
cagcgtcaatatgatccagttatacttttcagttttagcaaaagagaatgtgaatttctt
gcaatgcagatggccagattggatctaaatggtgatgatgaaaaggcgagcatagaaacc
atcttttggagtgctatggatatgctttcagatgatgataagaagcttcctcaggtttca
aatatgttgcctctcttgaagcgtggaataggtgtccaccattctggcttgctccctatt
ttgaaggaggtgattgagatattatttcaagaagggctaatcaagtgtttgtttgccaca
gagaccttcagcattggtttaaacatgccagcaaaaactgttgtcttcagtaatgtccgt
aagttcgatggagataaatttagatggttatcaagtggtgagtatatacaaatgagtggt
cgagctgggcggagaggaattgataaacgtggtatatgtatccttatggtggatgagaag
ctggaaccatcaacggctaaaatgatgcttaaaggaaatgctgattgcttgaacagtgct
ttccatttgagctataatatgctcttaaatcaaatccgttgtgaagatggcgatcctgaa
aatctgctgcgcaattccttctatcagttccaagccgaccgcaacatacctaatctcgag
aaacaagtgaaaacccttgaagaggagagggattccatagtgattgaagaggaagatagt
ttgaaaaattattatgatttgctaaagcagtacaaaagtttgaaaaaggatatccatgat
attgtgttgtctcctagatactgcttgccatttctacaacctggcaggcttgtatctatt
gaatgcaacaggtatgatgtgaattcttcgactttctccattaaagaccaggttacgtgg
ggattgatgattaattttcaaagggtgaaaggtgtttctgaagaggatattagcatgaaa
ccggaatctgctaactacactgtggatgttcttacgaggtgtgttgtcagtaaagatgcc
atagggaaaaaaactgttaagattgttcaattgaaagagcacggagaacctcatgttgtt
tccatcccaatctctcagatcagtactctagccggtattcggatactcatacccaatgat
ctcttgccgttggaaactcgagaaaatacattgaagaagatttctgaagttctatcaaga
tttccaaagggtgtgccccttctagatccagaagaggacatgaaaattcaaagtagttca
tacagaaaggcagttcgtagaacagaggccttggagaacctctttgacaagcatgaggtg
gcaaaatcaacacttgttgagcagaagctcaaagcattgcatttgaagcaagagttgaca
gctaagatcaggtcaattaagaaaacaatgcgttcttcttctgcattggctttcaaagat
gaactgaaggccaggaagcgagtattgcggaggcttggttgcatcacaagtgatgacgtt
gtggaactgaaaggcaaggttgcttgtgaaatcagtagtgcaaatgaattaactctttct
gagctgatgttgaatggggttttcaatgacactaaagtggaggaacttatctctctccta
tcttgttttgtgtggcaagagaaacttcaggatgcagcgaagcctagggaagagcttgag
ctgctattcattcaattacaagacacagctcgaagggtagctaaggttcagcttgaatgc
aaggtagagattgatgtggaagggtttgtgaattcatttagagcagatattatggaggtt
gtgtatggttgggcaaaaggatcaaagttctatgagataatggaaataacgcaggttttt
gagggaagcttggttagagcaattagaagactggaggaagtcttgcaacaactaatagtg
gcagcaaaggccattggtgaaactgagcttgaaaccaagtttgaagaggctgtttccaaa
atcaagagggacattgtctttgctgcttctctctacttatag
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