Cucurbita maxima (winter squash): 111495324
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Entry
111495324 CDS
T05246
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111495324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111495324
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111495324
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111495324
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111495324
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111495324
NCBI-ProteinID:
XP_023001070
UniProt:
A0A6J1KK22
LinkDB
All DBs
Position
Unknown
AA seq
707 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIIQSDSSFLPAASAVSNSVVGAVGPAVTAD
APGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
DCVYKHTNEDIKECNMYKFGFCPNGSDCRYRHAKLPGPPPPVEEILQKIQQLGSYNYGSS
NKFFSQRGVGLSQQNEKSQIPQGPAPVTQGVLGNPSAAESADVQQPQAQQTAQQTSQTQT
QGLSNGQPNQLNTTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
SADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS
FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAELKREEE
KARGVNPGSGSENPDIVPFEDNEEEEEEDSEEEEEEESLGQSVGLPAQGRGRGRGIMWPP
HMPMGRGPRPFHGMPGFPPGMMGPDGLPYGPVTPDGFPMPDMFGMAPRGFGPYGPRFPGD
FMSPPAAMMFRGRPSQPGVMFPPGGFGMMMGQGRGPFMGGMGVPGPNPARPGRPMGVSPL
YPPPALPSSQNINRAVKRDQRGPGSDRNDRYITGPDQNKGQEMPRHDEEMQYKQAKTYPD
EQYGIGTTSRNEESESEDEAPRRSRHGEGKKKRRGSEGGDATAISDQ
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcggagggcgttctcagcttcgatttcgagggcggcctcgatgccggcccc
actaaccccgccgccacctcctccttgcccataatccagtcagattcttctttcctcccc
gccgcttccgccgtctccaactccgttgtcggcgccgtcggtcctgctgttacagctgat
gctcctggcgccccaaccggcaacgtcggaaatcggaggagcttccggcaaacggtttgc
cgtcattggcttcgaagcctctgtatgaagggtgacgcctgtggcttccttcaccagtat
gataagtctcggatgcccatttgccggttcttccgtctctatggcgagtgccgtgagcag
gattgcgtgtacaaacataccaatgaagatattaaggagtgtaatatgtacaagtttggt
ttctgtccaaatggttctgattgtcgatataggcacgcaaagctgcctggacctccacct
ccagtggaagaaatccttcagaaaatacagcaattaggttcatacaattatggttcctca
aacaaattcttttcacaacgtggagttggcttatcccaacagaatgaaaaatctcagatt
cctcagggtccggcccctgttactcaaggagttttaggaaacccttctgcagcagaatct
gctgatgtccaacagccgcaagctcaacagactgcacaacaaaccagccagactcagaca
caaggtctttctaatggccagcccaatcaactaaacacaactgcaacgtctttgcctcca
ggaatatctaggtactttattgttaaaagttgcaaccgagagaatttggaattatctgta
caacaaggggtatgggcaactcaaagaagcaatgaagccaaacttaatgaagcttttgat
tctgctgataatgttattttgattttctcagtcaatcggactcggcattttcagggttgt
gcaaagatgatgaccagaattggtggatctgtcagtggaggcaattggaaatatgcacat
ggaactgcacattatgggcaaaacttttcactcaaatggctgaagttatgtgaactatcc
ttccagaaaactcgtcatttgaggaatccatataatgaaaacttaccagtaaagatcagt
agagactgccaagagctagagccctctattggtgagcagctggcttctttgctttatctt
gagccagatggtgaactcatggccgtctcagtagcagcagaattaaaacgagaagaggag
aaagctaggggagttaatcctggcagtggaagtgagaacccagatattgtcccgttcgag
gataacgaagaagaggaagaggaagacagtgaagaggaggaggaggaggagagccttggc
cagtccgttggtttaccagctcagggcagaggaaggggcaggggaatcatgtggcctcca
catatgccaatgggacgtggtcctagaccctttcatggaatgccgggttttccacctggg
atgatgggtccggatgggctgccttatggtcctgttacacctgacggatttcccatgcct
gacatgtttggtatggctcctcgtggctttggtccatacggtcctaggtttcccggtgat
tttatgagtcccccagctgctatgatgttccgtggacgaccttctcaacctggggtcatg
ttccctcctggtggatttgggatgatgatgggtcaaggacgtggtccctttatgggtggg
atgggggttcctggtcctaacccagctcgacctggtcgtcctatgggtgtgtctccgttg
tatccacctcctgcattaccatcatctcaaaacatcaatcgagctgttaagagggaccaa
aggggaccgggtagtgatcggaatgatagatatattacgggtccagaccaaaacaagggc
caggagatgcctagacatgatgaagaaatgcaatataagcaggcaaaaacttatcctgat
gagcaatatgggataggaaccacctctaggaatgaagaaagtgaaagtgaggacgaggca
cctcgacgatcgaggcatggagaagggaagaagaagcggagaggctcagaaggaggagat
gcaactgcaatctctgatcagtga
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integrated database retrieval system
