Cucurbita maxima (winter squash): 111495412
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Entry
111495412 CDS
T05246
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111495412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111495412
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111495412
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111495412
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111495412
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
VHS
Ribonuc_2-5A
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
111495412
NCBI-ProteinID:
XP_023001210
UniProt:
A0A6J1KKK6
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MNPFMESEKLLISRGNPRTLAYTSDRPLPTTTGRAMPNELPQKPSPSIAHRFRAQLKQRD
DEFRVSGLDVAPLPTTEDIVQLYELMLSELTFNSKPIITDLTVLAEEQREHGKGIADLIC
SRILEVPVDQKLPSLYLLDSIVKNVGHEYINYFSSRLPEVFCEAYRQVHPNLHNAMRHLF
GTWSTVFPPSILRKIEARLSQLTTQETSALTSSRASESPRPTHGIHVNPKYLRQLEHSVG
DKLLALQHIPEARGASTLKVHDKKLAPGYEEYDYDHADGLEHGGSQAFNSMGSMSHDSFS
LGTNKANIKLAKSSLSSRIGHNGPLQSVGDELETVRASPSQNVYDYEGFRMINRNEDTNK
WRRKQYPDDNINGLESTSFNIRNGCALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSMNG
IDNKMTPVTWQNTEEEEFDWEDMSPTLADRGRSNDMSKPPVPPSRFRTRLGFDRSNVMSI
EPGMRNNSSHQDVWSMHSHLSQTSQNLVSTKGTGGNFQIPLLGRGIASSGGEKMSPFVDK
LPTNDALHRPTVASRLGSSALDSSMESQSVVQSMGQRHPVNLSDSCPPSRPPFHVPGHNK
SQFESLNGSNAFINRANRSFFPEQQMNNVRNKELSHTTKSPQVGNQHGGRILLTQGNQLQ
TIPLKPQFLPSQDMHDSFSASAVPPVLPHLMAPSLSQGYSSQGLRPGISECLSSSVPIGQ
WNLPVHNSPSNPLHLQGPLPPLPAGPHPTISQKAGSLVPGQQPGTAFSGLISSLMAQGLI
SLNNKAPVQDSVGVEFNPDVLKVRHDSAITALYADLPRQCMTCGLRFKTQEEHSNHMDWH
VTRNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEKKDDEELAVPAD
EDQKTCALCGEPFDDFYSDETEEWMYRGAVYMNAPDGQTAGMDRSQLGPIVHAKCRTESN
VVPSESFDQDEQRGVSEEGSQRKRLRS
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctttcatggaatcggaaaagctcttaatttcacgaggaaaccctagaacttta
gcatatacatccgaccgcccactccccaccaccaccggtagggctatgcccaatgagttg
ccacaaaagccttccccttcaatagctcaccggtttagagctcagctaaagcagcgggat
gacgaattcagggtttccggccttgatgttgcgccccttcctaccactgaggatatcgtg
cagttgtacgagctcatgttgtcggagctcacttttaattcgaagcccatcattacggat
cttactgttcttgctgaagagcagagagaacatgggaagggcattgccgacttaatttgt
tcgcgtattctagaggttccggttgaccaaaaacttccttcattatatctgttggacagc
atcgttaagaatgttgggcacgaatacatcaattatttctcgtctcgtttacctgaggtg
ttttgcgaggcttacaggcaagttcatcctaatttgcacaatgcaatgcgtcacctcttt
gggacatggtcaactgtgtttccaccttccatccttcggaagatcgaggctcgactttct
cagctaacaacacaagagacctcagctttgacatcctcgagggcttctgaatctcctcgg
ccaactcatggcattcatgtcaatccaaaatacttgcgtcaactggaacactcagtgggg
gataaacttttagctctgcagcatatcccagaagcaagaggggcctcaactctaaaagtt
catgataaaaaacttgctcccggatatgaagagtatgactatgatcatgcagatggtctt
gaacatggtggatctcaagcgtttaattcaatgggaagcatgagccatgattctttttct
cttggaacaaataaagcaaatataaagctagcaaaatcgtctttgtcttcaaggattgga
cacaatggacctctacaatcagttggtgatgaacttgaaacggttagagcctcaccatca
cagaatgtatatgattatgaaggttttagaatgattaataggaatgaggatactaataaa
tggaggagaaaacaatatcctgacgataatattaatggacttgaaagtacttcatttaat
attagaaatggatgtgcacttgagggaccaagagctttaattgaagcatatggaagcgac
aaaggaaaaggttatttaaatgacaatccaccacaggctgaacatttttctatgaatggt
atagacaacaagatgactccagtaacgtggcagaacactgaagaagaagagtttgattgg
gaagatatgagccccacattagctgacagaggcagaagtaatgatatgtcgaagccacct
gtcccgccttcaagatttaggacaagattaggatttgacagatcaaatgttatgtctata
gagcctggaatgagaaacaattcgtctcatcaggatgtttggagtatgcacagtcacctt
tctcagacatcccagaacctcgtaagcactaaaggaacgggaggaaatttccagatacct
ttattggggagaggcatagcttcatctggaggtgagaagatgtctccttttgttgacaag
cttccgaccaatgatgctttacataggcctaccgttgcttcaagattgggttcttctgct
cttgactctagcatggagtcacaatcagttgtacagtctatgggccaaaggcatcctgtg
aatctttcggactcttgcccaccctctaggcccccttttcatgtgccaggacacaataag
agtcagtttgagtctttaaatggtagcaatgctttcatcaatcgtgcaaataggtcattt
tttcctgagcagcagatgaataacgtgagaaataaggagctaagtcatacaactaagtcc
ccacaagttggtaatcaacatggtgggcgtattcttttgactcagggaaatcaattgcag
accatccctttaaaaccacaatttctaccatctcaggacatgcatgatagttttagtgca
tcagcagtacctccagtgttaccacatttaatggctccatctttgagtcaaggatacagt
tctcaaggacttcgccctggtattagtgagtgtttgtcaagttctgtccctattgggcaa
tggaacttgcctgttcataatagccccagtaatccattgcatttacaagggccgctgcca
ccccttccagctgggcctcatcctactatctctcaaaaggcaggatcccttgttcctggc
cagcaacctggaactgcattttctggcctgataagttctctcatggcccagggtttgatc
tcattgaacaataaagctcctgtacaggattctgttggggtagaattcaatccagatgta
ctcaaggtgcgacatgattctgcaataactgctctatatgctgatcttcctagacaatgc
atgacctgtggtcttcgattcaagacccaggaagagcatagtaatcatatggattggcat
gtcactagaaatcgtatgtcaaaaagtaggaaacaaaagccttctcgaaagtggtttgta
agtacaagcatgtggcttagcggtgcagaggctttgggaacagaggcagttccaggattt
ttgcctgcggaggtcattgtagagaaaaaggatgatgaagaactggctgtgcccgccgat
gaggatcagaaaacgtgtgcattatgtggagaaccttttgatgatttttacagtgatgaa
acagaggagtggatgtataggggtgctgtctacatgaatgcacctgatggacaaacagcc
ggcatggatagatctcagttagggcccatagtgcatgctaaatgcaggaccgaatctaat
gtggttccctcagaaagttttgaccaagatgaacaaaggggagttagtgaagaaggtagt
caaagaaaacgattgcggagctag
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