Cucurbita maxima (winter squash): 111496206
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Entry
111496206 CDS
T05246
Name
(RefSeq) RNA polymerase sigma factor sigC-like isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111496206
Transcription machinery [BR:
cmax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
111496206
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Motif
Other DBs
NCBI-GeneID:
111496206
NCBI-ProteinID:
XP_023002339
UniProt:
A0A6J1KQ64
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MATSFRPNLKWSFQIQAHSRRSSPSKASPYASKGREASFGSGRLSFFSSICEEGEFISRE
TFKTYTCLSEAPQSSADDLLDLKVIEINNKARPPGHLHYGLKGTRPSRVDNNFSAGTSLP
TGKASSFGMLMKNIDVLEETFAESGMLSMGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVV
YSGKRAGRRSVKERAVDNADKVASQLLTTRAAKEKFRNSSIFSRKRAFKRLTVAQNEVEI
STGVKVVANLERIRETLEKATGKISSMSCWANAAGVDIKDLQNQLQFGWFCQDELLRTTN
SLVRFLSKKYRCSGLPMEDLVQAGAVGVLQGVERFDPKRGFRFSTYIHYWIRKSMSSVVA
RNSREIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAKVRLVNNCLRVVG
SIDQKRSDGLNVKYMEFAADTSIQSPEETVKKTHEDRHF
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaagtttcaggccaaatctcaagtggagttttcaaattcaggctcattctcgc
cggagctccccttccaaggcttctccatatgcctctaaaggcagggaagcttcttttggt
tcaggaagactttccttcttctccagtatttgtgaggaaggagaatttatctctagagag
acctttaaaacgtacacttgcttgtccgaagctccacaatcctcggccgatgatctgtta
gatttgaaagtgatagagataaacaataaggcaaggccacccggtcatttgcattacggg
ttaaaaggcaccaggccgtccagagtagacaacaacttttctgctggtacgagcttgcct
actggcaaagcgtcgtcttttggcatgttgatgaaaaacattgatgttttggaggaaact
tttgctgaatcaggcatgctaagcatgggaagagatggccaaaatgacttagccattgag
gacggtggatatcataatgtaaacccaaaaacagatggccagaatgatgacgtcgtagtt
tactctggaaaaagagcaggaagaagatcagtaaaagagagagcagtggataatgctgat
aaagttgcttcccagctgctaactacacgagcggctaaagaaaaatttcgtaattcctcg
atattttcaagaaaaagagcgtttaaaagactgaccgttgcacaaaatgaagttgaaata
tccacaggggttaaggtagttgcaaatttagaaagaattagagaaactttagagaaggca
actggaaaaatatcaagcatgagttgctgggccaatgctgctggtgttgatataaaggac
ctccaaaaccagctgcaatttggttggttctgtcaagatgaactcttaaggactactaat
tcattagttcggttcctttcgaagaagtatcgatgctctggactaccaatggaggactta
gttcaggcaggagctgttggtgttctgcaaggtgtggaaaggtttgacccaaaaaggggt
tttagattctcaacctatatccattactggataaggaaatcgatgtcgagcgttgttgca
cgaaattcaagggaaattcaaattccatggtcattgaccaaggcaatgaatcagattcag
aaagcccgaaaggtcttgaacaacggtagtagtcgatattctgatgacgatatagcgaag
gccactggtcttcctttggctaaggttagacttgttaacaactgcttaagagttgtgggt
tcgattgatcagaagaggagtgatggcctaaatgtgaaatatatggaatttgcagcagat
acttcaatacaaagcccagaagagaccgtgaagaaaactcatgaagatcgacatttttaa
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