Cucurbita maxima (winter squash): 111496219
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Entry
111496219 CDS
T05246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03015
mRNA surveillance pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111496219
09122 Translation
03013 Nucleocytoplasmic transport
111496219
03015 mRNA surveillance pathway
111496219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111496219
03041 Spliceosome [BR:
cmax03041
]
111496219
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111496219
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111496219
Spliceosome [BR:
cmax03041
]
Complex C
Other components
EJC/TREX
111496219
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111496219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
111496219
NCBI-ProteinID:
XP_023002354
UniProt:
A0A6J1KNP7
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgaatatgaggaagagctcctcgactatgaggaagaggaa
gagaaggcacccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gttggaattcacagttcgggattcagagacttcctattgaagccggagcttctccgtgct
attgtggactcgggatttgagcatccatctgaagtgcaacacgaatgtattccccaagct
atcctcggcatggatgttatttgtcaagctaaatctggtatgggtaaaactgctgttttt
gttctgtcaacactgcagcagattgaccctgttgctggtcaagtttctgccctagttctg
tgccatactagggagcttgcgtaccagatctgtcatgagttcgaaaggttcagcacttat
cttcccgatctgaaagttgcagttttctatggtggggtgaatattaaaattcacaaagat
cttctgaagaacgaatgccctcatattgttgttggaacacccggaaggatattggcattg
acaagagataaggacctttccctgaagaacgtgcggcattttatcttggatgaatgtgac
aagatgcttgagtcacttgatatgcggagggatgtacaggaaatcttcaagatgactcct
catgacaaacaagttatgatgttttcggcgacactcagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtcgatgacgaggcgaagttgacatta
catggtcttgtccagcactacatcaaactgagcgagatggagaaaaatcggaagttgaac
gacctccttgatgcattggactttaatcaagtggttatttttgttaaaagtgttagtagg
gcagctgagctggataagttattggtggagtgtaattttccatctatatgtatccattct
ggcatgtctcaggaagagaggttgactcgatacaagggtttcaaggaaggacataagcgg
attcttgtggcaacagatttggttggtcgaggaattgatattgaacgtgtaaacattgtc
atcaattatgacatgccagattctgctgatacttacctgcacagggttggcagagctggt
agatttggcaccaaagggcttgcaattacttttgtatcatctgcagctgattctgatgtt
ctcaacaatgtccaagaaaggttcgaagtagatattaaggagcttccagagcagattgat
acatccacatacatgccatcatag
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