Cucurbita maxima (winter squash): 111496308
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Entry
111496308 CDS
T05246
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111496308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111496308
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111496308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
111496308
NCBI-ProteinID:
XP_023002484
UniProt:
A0A6J1KQK5
LinkDB
All DBs
Position
Unknown
AA seq
243 aa
AA seq
DB search
MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA
SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI
NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP
EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS
KVG
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggagatagacagagatgatggccgtaccgccaaccagttgagaccacttgcttgttct
tgcaatgttcttaatcgtgctcatggatccgccagttggtctcaaggcgacacgaaaatt
ctcgctgcagtctatggacctaaagcaggaacaaagaagaatgaaaatcctgaaaaggct
tcaattgaggttatatggaaaccgaaaacagggcaaattggaaaactggaaagggagtgt
gagatgatattgaagaggacattgcagagtatttgcatattaactataaatcccaatacc
accacatctattgtagttcaggttattcatgatgatggagctcttcttccttgtgcaatt
aatgcatcatgtgctgccttagtagatgctggaattcctttaaagcatcttgctgttgca
atttcttgttgtttgtctgagagtggatatgttattttggatccaaccaagctagaggag
cagaaaatgaaggcttctgtacatttggtctttccgaactcacccgtctcagtaattcct
gaaggatctacccaagttggaggcgaacctctggagaacggaataataacatctttaact
cagggtgcaatgtcagtggatgattatattcactgtctggaacgagggcgtgctgcaaca
gcaaaaatgtcagcttttttgaggagaagcttgcagccccaactcccaacggattcctca
aaagtcggctga
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