Cucurbita maxima (winter squash): 111496429
Help
Entry
111496429 CDS
T05246
Name
(RefSeq) DNA excision repair protein ERCC-8-like isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03420
Nucleotide excision repair
cmax04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111496429
09124 Replication and repair
03420 Nucleotide excision repair
111496429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cmax04121
]
111496429
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111496429
Ubiquitin system [BR:
cmax04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
111496429
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
111496429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_LRRK2
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
111496429
NCBI-ProteinID:
XP_023002627
UniProt:
A0A6J1KK17
LinkDB
All DBs
Position
Unknown
AA seq
476 aa
AA seq
DB search
MWKDIRDREAGKLRPNSFANRVKSDRVSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLL
SGASDASAAVFDIQRASHSEGLIAKYQCLFAVDKQHEHGHKYAISSAIWYPIDTGLFVTG
SYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAF
SHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPI
SGWTANKLSTSKSHLASQGSNMKSRILHKKLATNGNATKPSSTTGKLPAKGSTRQRLHPG
LLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETVRLHTNK
PLQLATSQDSALVFAPCMANIKAFDMWTGKASLTLSGHYEAVNCCLYSFQDQELYTGGND
RQILVWSPSRDSTELWTRRIGNPVQTKITGATDCPLPQGRSVSTLMPSIKLCPPCT
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggatattagagatagagaagcgggaaaactccgcccaaattcttttgctaat
cgtgttaaatccgatcgagtcagcagtctgcaactttccaatcataaggacattgtctct
ccccatcgaggttccgtcaactcacttcaggtcgatttgacggaggggagatatttgtta
tctggagcatcagatgcatcggctgctgtttttgatattcaacgtgcatctcattctgag
ggtcttattgcaaaataccaatgcctttttgcagttgataagcagcatgaacatggacat
aaatatgcaatttcctcggccatatggtatcccattgatactggattgtttgtcacaggt
tcatatgatcatcacattaatgtctgggatacaaatacaactcaggtggtggtgaacttt
aaattgcctggaaaagtctataggacagccatgtcctctttggcaacatcacacatgctg
attgctgctggaacagaagatgttcaagtccgcctttgtgatatttcatcgggggcattt
tctcacaccttatctggacatcgtgatggtgtaatgagtgtagaatggtcagcttctagc
gagtgggttttgattactggcggatgtgatggagcaattcgtttttgggacatcagacga
gctggatgttttcgagttctagatcagtctcaatcccagctcgggcgacgtccacctatt
tcaggatggactgcaaataagctatcaacatctaagtcccatttggccagccaaggttca
aatatgaaatctcgcatacttcataagaaactagccaccaatggaaacgcaacaaagcca
tcatctactacaggtaaactgccagctaagggatccacaaggcagaggctacacccaggg
cttttgtccagccaggatcgagcagtttctcactacggtgctgttactggattaaaagta
actggagatggcatgtaccttctcagtgcaggttctgattcaaggttaaagttgtgggat
gtcgaatccgggtgtaacacgctcgtgaattatgaaaccgtgagattacataccaataag
ccgttgcaattagccacatctcaagactcagcccttgtatttgctccatgcatggcaaat
attaaagcatttgatatgtggacagggaaggcatccctgacgcttagcggccattacgaa
gctgtgaactgttgcttgtatagtttccaggatcaggaactgtacactggtgggaacgat
aggcaaattctcgtctggtcaccatcccgggactctaccgaactgtggactcgcaggatt
gggaatccagtgcagacaaagataactggagcgactgattgtcctcttccacaaggacgt
tcggtttcaacgctgatgccatccataaaactctgcccaccatgtacataa
DBGET
integrated database retrieval system
