Cucurbita maxima (winter squash): 111497504
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Entry
111497504 CDS
T05246
Name
(RefSeq) uncharacterized protein LOC111497504 isoform X1
KO
K19026
spatacsin
Organism
cmax
Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111497504
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111497504
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
111497504
NCBI-ProteinID:
XP_023004088
UniProt:
A0A6J1KYH3
LinkDB
All DBs
Position
Unknown
AA seq
3235 aa
AA seq
DB search
MDSVSGCEGPAILQLQNWNPSQPQLNLSEYREAFISPTRSILLLHSYKHEALLLPLDTGD
NRCSDDFPNKYDIDLKDLGSSAFSEEASTTCWREDDEGDVQCSNRLAVDVDKDSPTKNRF
SRSSCNNFLGDVSSLAWGLCGESYTKHEDSSFKEILFVSGNHGVTAHAFCQPKKVVVEGK
NMVQSEFWKGRWVEWGPYPRLPQNLEIEERSGFCETSGNVDENGTNQNGEMLRSSCSEFE
NDALLSGDSASKRYLQSFLAKVKTVEFEDNIWTMYPEKTSVPCFTKVVSFNIFNYNLPPP
NSDDSFVNEQSWHEIILGTRSNMSPTSFDTHFLSDILSNVLGIGMNKSYKCSRIFSSDSH
FLIGFVLKRMDTVSVEEGAETESRNGTLILVARVGNLGIKWVSSVKFEKSLYITPVMEWA
DFCFSNDFIVCLSDSGFIFLHSALSGKHVACIDVLQACGLNSQYLHEKQDLQRNIVDQVQ
DDLSYRRSFHERRKFRRLLSDSHSSHFAVIDASGVIYVVSAIEHMLEHCHGYENLFPHSH
DFKLGRSLVSWEVGGYDIGCQRNYSESLGNHSCRDFSKQNEGASHWGNTKSNVLQNIKDS
KVYRGRGDKCSCLTASASFLKDQKSVGGELQSCIMRKMFLSTWKTNEDDCFGFSPMGITQ
YIKRCNMSGQNISQVVHFDLHLKSEVHDDSCLKSQMIFVDGRKKDIVGEAVGCTSQGSLY
LVTNNGLSVVLPSVTIPSNSLPPEYVARSQPDIILGTANQVKDLELKESKCPWSPWQVEV
LDRVLLYESIDEADRLCSENGWDLKVVRMRCFQMALHYLRFDELERSLEMLVEVDLEEEG
ILRLLFAAVHLMFQKAGNDNDISAASRLLALGTHFATRMIHRYGMAEFKRNATTFNDFSS
GQEISILPHLPFQKQNVSEHSRKLHEMSHFLEIIRNLHGHLSSKFKRPSQELVVGEVSDQ
TSLLLDEPQLVSTDIISLGNTSQYELSFPSNDLNSNVVDGLAIMPMVSGSQFNSEDLDED
SAVVPQGVLEKKVVPLENPNQMIARWKSDKLPLKNVVKDALLSGRLPLAVLQLHINHLRE
LIEENEPHDTFSEIRDIGRAIAYDLFLKGETGLAIATLQRLGDDIEVSLKQLLYGTINRS
FRVEIAAEMKKYGYLGPFDQRMMDRILHIERLYPSSNFWKTFLSRQKANMGFPSSSNSPG
ENELRTLRFHLINNTFIDCGEVDGVVLGSWPNANESSSVVETTEDNAHIGYWAAAAIWTN
TWDQRTTDRILLDQSLGNGIHVAWESQLDYHICHNNWDGVSRLLDMIPDANILDGSLQVS
LDGLQSASAVGCNRESTFYSNYLYPLEELDAVCLYIPNVKIFKFSANIMCSKLLGMLLEE
KLARHFIFLKEYWEGSMELVPLLARSGFIIHRLDEIASMDDHISSSVDQRSSNKGGAYSV
DSVQALYKVFIHHCSQYNLPFLLDLYLDHHKLVIDNNSVHSLLEAAGDCHWARWLLLSRI
RGCEYDASFSNARSIMPLNLVHDPNLSVRNIEEIISTVADIAEGGGEMAALATLMYAPSP
IQDCLSSCGVNRHSSSSAQCTLENLRPVLQRFPTLCRALVTSAFQQDTTCNFLGPKWKNA
LSEYLHWRNSTIFSAGRDTSLLHMLPCWFPKAVRRLLHLYVQGPLGWQSISGLPTGQALW
ERDVYFVMNDDEHSEISPISWEAAIQKHIEDELYDSSLKETGLGLEHNLHRGRALSAFNH
LLVARVQKLKSEIQSGSAIGQSNIQLDLQTLFAPLTPMEQSLLSSVIPLAITHFENSVLV
ASCAFLLELGGLSASMLHVDVAALRRISTFYKSGQSFENFRQLSPKGSAFHPVPLESDKI
ETLARALADEYLHQESSSVNEPKGTSDSAPPKRCSQVLLFVLQHLEEVSLPHMVDGNSCG
SWLLCGKGDGTELRNQQKTASQHWNLVRVFCRMHRIPLSSKYLALLARDNDWVGFLTEAH
VGGYPFDTVIQVASKEFSDPRLKIHILTVLKSVQSRKSPGPSSYSDTEEKKGQTTILDGS
MYIPVELFTILAECENKKNPGKALLIKAEELSWSILAMIASCFPDVSPLSCLTVWLEITA
ARETTSIKVNDIASQIAENVGAAVEATNTLPAGCRSSAFHYCRKNPKRRRTMDSVSDDPS
VIAISDNFSASRASTKVPGDSIVMEEGKIVQEPQRISVSYDSDEAPSSLSKMVSVLCEQK
LFLPLLRAFEMFLPSCSLLPFIRALQAFSQMCLAEASAHLGSFSARVKDEAIYSHANVEG
EENTGTSWTGSTAVKAANAVLSVCPSPYERRCLLKLLAATDFGDGGFSASYYRRLYYKIN
LAEPLLRIDDGLHLGNEALDDASLLSALENNRHWEQARNWAKQLEASGGSWKSASHHVTE
TQAESMVAEWKEFLWDVQEERVALWGHCQALFIRYSFPALQAGLFFLKHAEAVEKDLPAK
ELHELLLLSLQWLSGMFTVSYPVYPLNLLREIETKVWLLAVESEAELKNERDLNISGSIR
ECKSRNSSSIIDLTASMISKMDKHISTMTNKNMDKHEVRENSQTHHKSQVLDAGLSTTGG
GNTKTKRRTKGSMLLRRPLADSADMNTNSEDGYISSNVKNDLHMQDENLKMDTSFSGWEE
RIGPAEVERAILSLLEFGQITAAKQLQQKLSPEQVPSEFLLVDASFKLAAISTSNREVPM
AMLDGDLCSVILSSGIQVDQYLNPLQVLETLATIFAEGGGRGLCRRVIAVVKAANVLGLS
FSEAYNKQPIELLQLLSLKAQESFAEANFLVQTHSMPAASIAQILAESFLKGLLAAHRGG
YMDSQKDEGPAPLLWRFSDFLKWSELCPSEPEIGHALMRLVITGQEIPHACEVELLILSH
HFYKSSACLDGVDVLVALAATRVEAYVAEGDFPCLARLITGVGNFYALSFILGILIENNQ
LEFLLQKFSAAISTSTGSAEAVRGFRIAVLTSLKHLIPNDLDAFAKVYSHFDMKHETAAL
LERQAEQSCEMWFRRYDKDQNEDLLDAMLYYIKAAEVYSSIDAGNKTRRSCAQASLVSLQ
IRMPDFKWLFQTETNARRALVDQSRFQEALIVAEAYDLDQPSEWALVIWNQMLKPDILED
FVAEFVTVLPLHPSMLSDIARFYRSEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCL
LKRTRDLRLRLQLAQLATGFMDVINACTKALDKVPENAGPLVLRKGHGGTYLPLM
NT seq
9708 nt
NT seq
+upstream
nt +downstream
nt
atggactcggtttccggttgtgagggtcctgccattctgcagctgcagaattggaatcct
tcacagcctcaacttaacctctcagagtatcgcgaagcttttatttctcctacaaggtca
attttgttattgcattcatacaaacatgaagcgttgcttcttcctctagatacaggggac
aacaggtgtagtgatgacttcccaaataaatatgatattgacttaaaagatttgggatca
tcagctttctcagaagaagcatcaacaacatgttggcgagaagatgatgaaggtgatgta
caatgctctaatagattggctgtcgacgttgataaggattctcctaccaaaaacagattt
tcaaggtcgagttgtaacaacttccttggtgatgtaagttcactcgcttgggggctttgt
ggagaatcctatacgaagcatgaagattcttcttttaaggaaattttatttgtatctgga
aatcatggtgtcactgctcatgccttttgccagccgaagaaagttgttgtggagggtaaa
aatatggtgcaatctgaattttggaaaggaaggtgggtagaatggggaccttacccaaga
ttacctcaaaatttggagattgaagaacgttctggtttttgtgaaacctctggaaatgtt
gacgaaaatgggacgaatcagaatggggaaatgttacgtagttcttgctctgagtttgag
aatgatgccctgttgtcaggagatagcgcatctaagagatatttacaatcatttcttgct
aaagttaagactgttgaatttgaagataacatttggacaatgtacccggaaaaaacgtca
gttccttgctttacaaaggtggtttcatttaatatatttaattataacctgccgccacca
aattctgatgattctttcgtcaatgaacagagctggcatgaaataatccttggaacacgc
agtaatatgagtccaacttcatttgacacccattttctatctgacattttatccaacgta
ctaggcattggcatgaataaatcatacaaatgttccagaatattttcaagtgattcacat
tttttaattggatttgttttgaagagaatggatactgtatctgttgaagagggtgctgaa
actgaaagcagaaatggtactttaattcttgttgctagagttggaaatttgggaattaag
tgggtgtcttctgtaaaatttgagaaaagcctatatattacaccggtgatggagtgggca
gatttttgcttttcaaatgattttatcgtttgtttaagtgactctggttttatcttccta
cactctgctttgtctggcaagcatgttgcatgtattgatgttttacaggcgtgtggactc
aattctcagtacttgcatgagaaacaagatttgcaaaggaatatagtagatcaagtccaa
gatgatttatcttatagacgtagttttcatgaaagaagaaagtttagaaggttattatct
gattctcattcctcacattttgctgtgattgatgcatctggtgtaatatatgttgtttct
gctattgaacatatgttagagcattgccatggatatgaaaatctgtttccacattctcat
gatttcaaacttgggaggtctctagttagttgggaggttggtggttatgatataggctgt
cagaggaactattcagagtcattggggaatcattcatgtagggatttttccaagcaaaat
gaaggtgcttcacattggggtaatactaaatctaatgtgcttcaaaatattaaggactca
aaggtttatagggggagaggagataagtgctcttgtttaactgcttctgcttccttttta
aaagatcagaagtccgtgggtggagaattacaatcttgcatcatgcgaaagatgtttctt
tccacttggaaaactaatgaagatgattgttttggcttctctcctatgggaattacgcaa
tacattaaaagatgtaacatgagtggccagaatatctctcaagttgtccattttgatttg
catctgaagtccgaagtccatgatgatagctgcttgaaatcccaaatgatttttgttgat
ggaaggaaaaaagatattgttggagaagcagttggttgcacttcacaaggatctctttat
ttggtgacaaataatggtctttctgtggttttgccttctgttaccattccgtcaaattct
ctacctcccgagtatgtcgccaggtcgcaacctgatattattcttggcactgctaatcaa
gtaaaagatttggagcttaaagaatccaagtgtccatggtcaccctggcaagttgaagtt
ttggatagggtcctcctatatgaaagcatagatgaggcagatcgcctatgttctgagaac
gggtgggacttgaaagttgtgcggatgcgttgctttcaaatggcattgcattatttgaga
tttgatgaactagagcgatctctagaaatgcttgtggaagttgatttggaagaagaagga
attttgagattactcttcgctgccgtacatctgatgtttcaaaaagctggtaatgataat
gatatttcagccgcttcaaggcttcttgcacttgggacacactttgcgaccagaatgatt
catcgatatgggatggctgagttcaagagaaatgctactacttttaatgactttagtagc
ggccaagaaatttccattctcccgcatcttccttttcaaaagcaaaatgtatcggagcat
tcaagaaaacttcatgagatgtctcactttttggagataataagaaatctgcacggccat
cttagttcgaaattcaagaggccaagtcaggaattggtcgtgggggaggtatctgaccaa
accagtctattgctggatgaaccacagcttgtttctacagatataatatcattggggaat
acaagtcaatatgaactgtcatttccttcaaatgatttaaactctaacgttgtagatggt
cttgctatcatgcccatggtttccggatcccagttcaattcagaagatttagatgaagac
tcggctgttgtaccacaaggagtcctggaaaagaaagttgttcccttggagaatcctaac
cagatgattgcacgttggaagtcagataagttgccacttaaaaatgtggttaaagatgct
cttctctctggccgtcttcctttggctgttcttcaactacacataaatcatttgagagaa
ttaattgaagagaacgaacctcatgatacattttctgaaattcgtgacattggaagagct
attgcttatgatctcttcttaaagggtgagactgggcttgccattgctacgctgcagagg
cttggagatgacattgaagttagcctcaagcaattgttgtatggtacaattaacagatct
tttcgagtggaaattgctgcggagatgaaaaaatatggttatctggggccatttgaccag
aggatgatggatagaatattacatattgagaggctctacccaagcagtaatttctggaaa
acatttctgagcaggcagaaagcaaatatgggattcccatcaagttctaacagcccagga
gaaaatgaattgaggacattacgtttccatttaatcaacaatactttcattgattgtggt
gaggttgatggtgtggttttaggttcgtggcccaatgccaatgagagctcttctgtcgtg
gagaccactgaagataatgctcatataggatattgggctgccgctgccatttggacaaac
acgtgggatcagcgaacaactgatcgtatattactggatcaatctttgggtaatggtatc
catgtagcatgggaatcgcaacttgattaccatatatgccataataactgggatggagta
tcaagacttctcgatatgattcctgatgctaatattttggatgggagcctccaagtaagc
ttagatggtctacagtcagcttcagcagttgggtgcaacagagagtctactttttacagc
aattacttatatcctctagaagagttagatgctgtttgcttgtacattcccaacgtcaaa
attttcaaattttcagctaatattatgtgctccaaattgttgggtatgctcttggaggag
aagcttgcaaggcattttatatttctgaaggaatattgggaaggctcaatggagctggta
cctcttcttgcccgttctggcttcattatacacagacttgatgagattgcttctatggat
gaccacatcagcagttcagttgatcaaagatcttcaaacaagggcggagcatattctgtt
gattctgtgcaagcattgtataaagttttcatacatcactgttcacagtataacttgcct
tttcttctcgacctttatctggaccatcacaaactggttattgataataattcagttcat
tcactactggaagctgctggagattgccattgggcaagatggctacttctgtcgaggatc
aggggctgcgaatacgatgcatcattttctaatgctcgctcaataatgccactgaattta
gttcatgatcccaacctcagtgttcggaatattgaagagattatttccactgttgctgac
attgctgaaggtgggggagaaatggcagccctagcaactctaatgtatgctccttcccca
atccaagattgtttaagtagctgtggtgtaaacagacatagtagctcgtcagcccaatgt
actcttgaaaacctcaggccagtcctgcaacgattccctacattgtgccgtgccctagtt
acatctgctttccagcaagatacaacttgcaattttttgggtccaaaatggaagaatgcg
ttatctgaatatctacattggcgtaacagcaccattttttctgctggacgtgatacttca
cttttacatatgctaccatgctggtttcccaaggcagttaggagattgcttcatctctat
gtccagggtcctcttggatggcaatcaatttcaggtttgccaacggggcaagcattatgg
gagagggatgtatattttgttatgaatgatgatgaacattctgaaatcagtccaatctct
tgggaagcagccatacagaagcacattgaagatgaactatatgattcatctctcaaggaa
actggacttgggctcgagcacaacttgcatcgtgggcgtgcattatcagcttttaatcat
cttcttgttgctagagttcagaaattgaaatcagagattcagtcaggttcagcaattgga
caatcaaatatacagttggatctacagacactttttgcgcctttgacaccaatggaacaa
tctcttctttcttcggttattccacttgccattacgcattttgagaactccgtgttagtt
gcctcatgtgcttttctcctggagctaggtggtttgtctgccagtatgctccatgtagat
gtagcagctttaagacgaatatcgacattttacaagtctgggcaatcctttgagaatttc
aggcaactttcacctaagggttctgcttttcacccagtacccttagaatctgataaaata
gagactcttgctcgagctctggctgatgagtatctgcaccaggaaagctcaagtgttaat
gagccaaagggcacttctgattcagcacctccaaaacgttgttcacaggtgcttttgttt
gtcctacagcatttggaagaggtaagtcttccccacatggtcgatggaaattcatgtgga
tcgtggttattatgtggtaaaggtgatgggactgagctaagaaatcagcaaaaaactgca
agccaacactggaatttagttagagtcttttgtcggatgcataggattcctctaagttcg
aaatatcttgctttgttagcaagagacaatgactgggttggatttttaactgaggctcat
gttggcgggtacccatttgacacagtaatccaagtagcatcaaaagagttcagtgatcca
cgtctcaaaatccatatattaacggtattgaagtctgtacagtcgaggaaaagccctggc
ccttcatcatactccgacactgaagagaaaaaaggtcaaaccaccattttagatggaagt
atgtatattcctgttgagctctttaccattttagctgaatgtgagaacaagaagaatccc
ggaaaagctctcttgataaaggcagaagagttgtcctggtctattttggcaatgattgct
tcttgcttcccagacgtctctccattatcctgtcttactgtttggctagaaattacagca
gcaagggaaactacatccattaaggtaaatgatattgcttcccagatagcagaaaatgtc
ggggcagcagtagaagctaccaataccttgcctgctgggtgtagatcatctgcatttcat
tactgccggaaaaatcccaaacgaaggcgaaccatggattccgtttctgatgatccatca
gttatagcgatatctgataatttcagtgcttcacgtgcatcaactaaagttccaggtgac
tctattgtcatggaagaaggaaagatagttcaggaaccccaacggatttctgtttcatat
gattcagatgaagcaccatcatctctgtccaagatggtttctgtgctttgtgaacagaaa
ctattcttgcctctgttgagggcttttgagatgttccttccttcatgttccctgctacca
ttcatccgtgcacttcaggcattttcacaaatgtgtttagctgaagcttcagcacattta
ggttcattttctgcacgagttaaggatgaagcaatctattctcatgcaaatgttgaggga
gaagaaaatactgggacgtcatggactgggtcgactgctgtcaaggctgccaatgcggta
ctgtctgtttgtccatctccatatgaaagaagatgcctactgaaacttctagctgcaact
gattttggtgatggaggattttctgcctcatattatcgacgactttattataaaatcaat
ttagctgagcctttactacgtatagatgatgggctccaccttggaaatgaggctctagat
gatgcatcacttttatcagcactagaaaataatagacattgggagcaagcacgcaattgg
gcaaagcaactggaagctagtgggggttcttggaaatcagctagtcatcatgtcacggaa
actcaggctgaatctatggtagcagagtggaaggaattcttatgggatgttcaagaagag
agagttgcattgtggggtcactgccaggcactcttcattagatattcctttcctgcttta
caggctggattgtttttcctcaaacatgcagaagctgtggagaaagatcttccagccaag
gagcttcatgaactattattactttccttgcaatggttaagtgggatgtttaccgtgtcc
tatccggtttatccattgaatcttctacgagaaattgagaccaaggtttggctgctggct
gtagagtcagaagctgaactgaaaaatgaacgggacctgaacatcagtggctccatccga
gaatgtaaatctaggaatagctcaagtattatcgacttgactgcaagtatgatatcaaaa
atggataaacatatcagtacaatgacgaataaaaatatggataaacatgaggtcagagaa
aacagccagactcatcataaaagtcaagtattagatgctggtctttcaactacaggaggg
gggaatacaaagacaaaaaggaggaccaaaggttccatgttactacgacggccattggca
gactctgcagacatgaacactaactctgaagatggatatatttcttccaatgttaaaaat
gatttgcacatgcaagatgagaacttaaaaatggatacatcgttttcagggtgggaagaa
aggattgggcctgcagaggtggaaagagccattctttcattgctagagtttggacaaatt
acggctgcgaagcagcttcaacaaaagctatctcctgagcaagtgccttcagaattcctt
ctcgtggatgcttcttttaagctcgcagctatatcaacctccaatcgcgaggttccaatg
gccatgcttgatggggatttatgttcagttattctttcatctggtattcaagttgatcag
tatctcaacccattgcaggttttggagactttagcaacaatttttgctgaaggtggtgga
cgtgggctttgtagaagagtaattgcggttgtaaaagcagcaaatgtcttgggactttca
ttttcagaggcatataacaaacagccaattgaactattacagctgctctctctcaaggca
caagagtcatttgcggaggcaaatttccttgtgcagactcactctatgcctgctgctagt
attgctcaaattcttgcagaatcttttctcaagggcttgctggctgcacatcgtggaggt
tatatggattcccagaaagatgaaggacctgctcctctactatggagattctctgatttc
ttgaagtggtcagaactttgtccttctgaaccagagattgggcatgccttgatgcgttta
gttattactggacaagagataccacatgcctgtgaggttgaacttttaattttgtcccac
cacttctacaaatcatcagcttgcctcgatggggttgatgttctcgtggctcttgctgcc
acaagagttgaggcttatgtagctgagggtgattttccatgtttagctcgtctgatcact
ggagttgggaacttctatgcccttagttttattcttggcattcttatcgagaacaatcaa
ctagaatttcttcttcaaaagttttcggctgctataagtacaagcacaggcagtgctgag
gctgtcaggggctttcgtatcgctgttcttacatcccttaagcatttaatccccaatgat
cttgatgcatttgctaaggtttacagccattttgacatgaagcatgaaacagctgccctt
ttggagagacaggcagagcagtcttgtgagatgtggttccgccgctatgacaaggaccag
aacgaagaccttttagatgccatgctgtactacattaaagctgctgaagtttattcttcc
attgatgctggcaacaaaactcgcagatcctgtgctcaggcctctctagtgtcccttcag
attaggatgcccgactttaaatggctcttccagacagaaaccaatgccagaagagctctc
gtcgaccaatcaagattccaggaggcactaattgttgctgaagcttatgatctcgaccag
ccaagcgagtgggctttagtcatttggaatcagatgcttaagccagatattttagaagac
tttgtggctgaatttgtcactgtgcttccactccatccttcaatgttaagcgacattgca
agattttacaggtccgaagtcgctgcccgtggggaccagtcccagttctccgtctggctg
actgggggagggttgcctgcagagtgggcaaaatatttgggaagatcatttagatgcttg
ttgaaaaggactcgggatttgaggctccgtttgcaactagctcaacttgccactggtttt
atggatgttatcaatgcttgcacaaaagcgcttgataaggtacctgagaacgccgggcct
cttgttcttaggaaagggcatggcggtacatatcttccgctgatgtaa
DBGET
integrated database retrieval system
