Cucurbita maxima (winter squash): 111498579
Help
Entry
111498579 CDS
T05246
Name
(RefSeq) flocculation protein FLO11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111498579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111498579
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111498579
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111498579
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111498579
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pfc11_Clp1_ID
zf-C2H2_4
zf-C2H2_REST
zf-C2H2
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
111498579
NCBI-ProteinID:
XP_023005637
UniProt:
A0A6J1KTP6
LinkDB
All DBs
Position
Unknown
AA seq
1086 aa
AA seq
DB search
MEMESSRRPFDRTREPGLKKQRLADEAERGGNINGRPFPQRPIGSGTNIVQPRFRASDRD
SGSSDSGRGGYQLQPLQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISAT
VCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSPVHTSMRH
LFGTWKGVFPPQTLQVIEKELGFITNSGSSSGTISSKPELQSQRPPHSIHVNPKYIERQR
LQQSGRVKGMTSDATIATTNVTQDVAQAKISTGRPWADASIKVHDIQRPLRDAPNDMAQE
KNITAAYADYEYGSDLSRTPGIGRRAVDEGRDKPWSTTGSNLAEKVSGQRNGFNIKLGYD
NYPAPRSANTGARLLPTQNFSSSSSSNRGLSTNWKNSEEEEFMWGEMNSMLTGHGASAIA
NSIGKDQWTPEDSDNSGIENKLLSLRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQ
VQEPLSLDGLRGGIPKKNSAQSGGYGATLTALSGGNSSVDQMGGRSQITSSNIGASGHEF
LNKGGSGSIGTAGQQIFPSRNVAFASGQPPLHQRPPSPLSVDHIPHQMPNHKTSSFSNLD
PRKRHLQDASLGRHPNVQSDNLKKPQPQDRQAAASSIPTSQPRQPFSLSESLKPDVRQSE
LSRQHAVSIPGTDFGPPSSAGTVPVRLPAEILGETSTSSLLAAVMKSGIFSNHSIASSMQ
QNISFQDAGNMQPHSNVKPPLPSRSSPAHTQTTFSEPKTAGESSLGPLESPSALVKLSQT
KVEDTPLPSDPPPPSSPMNSASTATSNVVNDSSTPISNLLSSLVAKGLISASKGEITNST
TSQMPAQPENLKLGDAVTCSVPVPSIPVTSSSQSSTILESSTKAAAKSSTSPPPFATTEI
TNIIGFEFSSHVIRKFQPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEANN
SNKTPRRWYPSSDDWISGNDILLHDAATSPDRCDMMEEVNEPMVPADEDHLVCVLCGELF
EDFYSHDLDKWMFKGAMYITIPSAVSEIGSTNEQVARGPIVHPKCITESALHDLGLATDI
KMEMDV
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcggagacctttcgatcgaacgagggaaccgggtttgaagaag
cagcgactggccgatgaggctgagcgcggtgggaacattaatggccggccgtttccgcag
agaccaattggttcggggaccaatattgtgcaacccagatttcgagcaagtgatagagat
tcgggaagcagtgattctggtcgaggggggtatcagcttcaaccactgcagcatcaggag
cttgtcagccaatacagaacagcccttgctgagctgactttcaattcgaaaccaatcatc
acgaatttgaccataatcgcgggtgaaaatctccaggctgcaaaagccatctctgccacc
gtttgcgccaacattctcgaggtttccagtgagcagaagctaccatcactttatctattg
gacagtattgtgaagaatattggaagagactacataaaatactttgcagcaaagctgccc
gaggtattctgcaaagcttataggcaagttgactctcctgtacatacaagtatgagacat
ctttttggcacctggaaaggagtgtttcctcctcaaacactgcaggttatcgagaaagaa
cttggtttcataaccaacagtggttcttcttctgggacaatatcctcaaagccagaattg
cagtcacaacgtccaccccatagtatccatgtaaatcccaagtatatagagagacaacgg
cttcaacagtcgggcagggtgaaaggaatgactagtgatgctactattgcaactacaaat
gtaactcaggatgttgcccaagccaaaattagcactggacgtccatgggcagatgcttca
attaaagtgcatgacattcagcgtccacttagagatgcaccaaatgatatggcacaagag
aagaacatcacggctgcatatgcagattacgaatatggttccgatctttcaaggactcca
ggtatcggaagaagggctgttgatgaagggcgagacaaaccttggtctacaactggtagc
aatttggcagagaaggtatctggccaaagaaatgggttcaacatcaagcttggatatgac
aattatcctgcacccaggtctgcaaacactggtgcacgtctactgcccacgcaaaatttt
tcaagcagcagcagcagcaaccgaggattgtctactaactggaagaactctgaggaagag
gagtttatgtggggtgaaatgaactctatgttgacaggtcatggtgcatctgccattgcc
aatagcattgggaaagatcaatggactcctgaggattcagataattcgggtattgaaaat
aagctattaagtttacgagatactgggggaagtgttgatagagaagcttccagtgattca
caatcatctgagcagagagaactgggggattctggacagcaaaggtcatcaatgtggcaa
gtgcaggagccattatctctggatgggctgagaggcgggattcctaaaaagaattcagct
cagtcaggaggatatggtgccactcttactgccctgtcaggtggtaactcttctgtggat
caaatgggaggtcgatcacaaattacatcgtcaaatattggagcttcaggacatgaattt
ctgaacaagggaggttcagggtccattgggactgcaggccagcaaatatttccatcacga
aatgttgcattcgcatctggacagccacccttgcatcaacgtcccccttcaccattgtca
gtggatcatattcctcatcaaatgcccaaccataaaacttcttcattttctaatcttgac
ccacgtaaaaggcatttacaggatgcttcccttggtcgacatcccaacgttcagtcagat
aaccttaaaaaaccacagcctcaggaccgtcaagctgcagcctcctccatacctacttct
caacccaggcagccgttctctttatctgagtcactaaaacctgatgtcaggcagtccgaa
ctttcaagacagcatgcagtatctattccaggcactgattttggacctccttcatcagct
gggacagttccagttcgtttacctgcagaaattttgggagagacaagcactagtagtttg
ttggctgctgtaatgaagagtggaattttttccaaccattcaatagccagtagcatgcag
cagaatatcagcttccaagatgcaggaaatatgcaaccccattcaaacgtcaaacctcca
ctaccaagccggtcttctcctgcccatactcagacgacattctcagagccaaagactgcg
ggagaatcttcattaggtcctcttgaaagcccatcagctctggttaagctatctcaaact
aaggtagaagatactccgttgccatctgatccacctccaccctcatctcctatgaatagt
gcatccacggcaacttcaaatgtggtaaacgactcttctaccccaatttctaaccttttg
agctcattggttgcaaagggccttatatctgcttcaaaaggagaaataacaaatagtaca
acttcccaaatgcctgcacagcctgaaaatttgaagttaggtgatgctgtgacatgttct
gtaccagttccttccatccccgttacttcttccagtcaatcatctacgatacttgaatca
tctacaaaagctgctgctaagagctccactagtccacctccatttgccacaactgagata
accaacatcataggctttgaatttagttcgcatgttattcgaaaatttcagccatctgtg
atcagtggactctttgacgatattccatatcaatgtaagatctgtggtctgagactgaaa
cttgaagaacagttggatacacacttgcagtggcacacgttaagaactgaggcaaacaat
tcaaataagacaccaagaagatggtatccaagttcagatgattggatttctggaaatgat
atactcttacatgatgctgccacttctccggacaggtgtgacatgatggaagaagttaat
gagccaatggtacctgcagatgaagatcatttggtctgtgttttatgtggtgaacttttt
gaagatttttatagtcatgacttggataagtggatgttcaaaggagcaatgtatatcacc
atcccatcagcggttagtgagataggaagcacaaatgaacaagttgctagaggacccatt
gttcacccaaaatgtataactgaaagtgcactacatgacttgggactggcaactgatatt
aagatggaaatggatgtatga
DBGET
integrated database retrieval system
