Cucurbita maxima (winter squash): 111499210
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Entry
111499210 CDS
T05246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111499210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111499210
03041 Spliceosome [BR:
cmax03041
]
111499210
03009 Ribosome biogenesis [BR:
cmax03009
]
111499210
03016 Transfer RNA biogenesis [BR:
cmax03016
]
111499210
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111499210
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111499210
Spliceosome [BR:
cmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111499210
Complex C
U4/U6.U5 tri-SnRNP related factors
111499210
Ribosome biogenesis [BR:
cmax03009
]
Eukaryotic type
Pre-60S particles
Helicases
111499210
Transfer RNA biogenesis [BR:
cmax03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111499210
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Prophage_tailD1
Motif
Other DBs
NCBI-GeneID:
111499210
NCBI-ProteinID:
XP_023006494
UniProt:
A0A6J1L2B4
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MGSSKRKVVEDTPRESSPKHHRTNESVMVEDEPVACVHDVSYPEGSYNPLPSINLSSTGE
KLEPAKVFPFSLDPFQSEAIKCLEIGESVMVSAHTSAGKTVVALYAISMSLRNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEITREVAW
IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHRQPCHIVY
TDYRPTPLQHYIFPSGGEGLYLVVDEKGHFREDSFQKALNALVPASDGYKKKENNGKWQK
SLTLGKTNEESDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKLDLNGDDEKANIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKMMLKGNADCLNSAFHLSYNMLLNQIRCEDGNPENLLRNSFYQFQADRNIPNL
EKQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPYLQPGRLIS
IECDSNNEISSTFSIKDQFTWGLIINFQRMKGVSEDDASMKPESANYTVDVLTRCVVSKD
GIGKKNVKIVQLKEHGEPHVVSIPISQISTLASIRILIPNDLLPLEARENTLKKISEVLS
RFPKGVPLLDPEEDMKIQSSSYRKAVRRTEALESLFDKHEVAKSALVDQKLKALHLKQEL
TAKIRSIKKTMRSSSALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSANELTL
SELMFNGVFKDIKVEEIIALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKAQLE
CKVEIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLT
LAAKSIGETELETKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggctcttcgaagagaaaagtggtcgaagatacgcccagagaatcttcaccgaagcac
cacagaaccaatgaatctgtcatggttgaggacgaaccagttgcgtgtgtccatgatgtg
tcctaccccgagggttcttataatcctctcccatcaataaatctctcttccactggagag
aagttggaaccggctaaggtgttccctttctctctggacccctttcagtccgaggctatc
aagtgcttggagattggagaatctgttatggtgtctgcccatacatcagctggtaagact
gttgtggcattgtatgcaatttccatgtctctccggaataaacagcgtgtcatatatacc
tcgccaatcaaggccctcagcaaccaaaagtatagggaatttaaagaagaattctcagat
gttggtttaatgactggggatgtgactattgaaccaaatgcttcttgtctggtcatgacc
acagaaatttggcgtagcatgcagtacaaaggatccgaaattacacgggaagtggcatgg
attatctttgatgaagtacattacatgcgtgatcgtgagcgaggtgttgtttgggaagag
agcattgtcatggctccaaagaatgctcgatttgttttcctctcagcaactgtgccaaat
gcaaaagaatttgctgattgggttgcaaaggtccaccgacaaccatgtcatattgtttat
actgactatcgaccaacacctcttcaacactatattttcccatctgggggtgagggctta
tacttggtggttgatgaaaagggtcattttcgtgaggatagctttcaaaaagctttaaat
gcacttgtccctgctagtgatggctacaagaaaaaggagaataatgggaagtggcagaag
agtttgactttgggcaaaacaaatgaagagagtgatatatttaagatggtgaagatgata
attcaacgtcaatatgatccagttataattttcagctttagcaaaagagaatgtgaattt
cttgcaatgcagatggcaaaactagatctaaatggtgatgatgaaaaggcgaacatagaa
accatcttttggagtgctatggatatgctttcagatgatgataagaagctccctcaggtt
tcaaatatgttgcccctcttaaagcgtggaataggggtccaccattctggcttgctccct
attttgaaggaggtgattgagatattatttcaagaagggctaatcaagtgtttgtttgcc
acagagacattcagcattggtttaaacatgcctgcaaaaactgttgtcttcagtaatgtt
cgtaagtttgatggggataaatttagatggttatcaagtggtgaatatatacaaatgagt
ggtcgagctggacggagaggaattgatgaacgagggatatgcatccttatggtggacgag
aagctagagccatcaactgctaaaatgatgcttaaaggaaatgcagattgcttgaacagt
gcttttcacttgagctataacatgctcttgaatcaaatccgttgtgaagatggcaatcct
gaaaatctgctgcgtaattccttctatcagttccaagccgaccgcaacatacctaacctc
gagaaacaagtgaaaagccttgaagaggagagggattccatagtgattgaagaggaagat
aatttgaagaattattatgatttgctaaagcagtacaaaagtttgaagaaggatatccgt
gatattgtgttgtctcctagatattgcttaccatatctgcaacctggcagacttatatct
attgaatgcgacagtaataatgagatttcttcaactttttccatcaaggaccagtttact
tggggattaataattaattttcagaggatgaaaggtgtttctgaagatgatgctagtatg
aaaccagaatctgcgaactacactgtggacgttcttacaagatgcgttgtcagtaaagat
ggcatagggaaaaaaaatgttaagatcgttcaattgaaagagcatggagaacctcatgtt
gtttccattccaatctctcagattagtactttagctagtattcgaatactcatacccaat
gatcttttgccgttggaagctcgagaaaatacattgaagaagatttctgaagttttatca
agatttccaaagggagtgccccttctagatccagaagaggatatgaaaattcaaagtagt
tcttacagaaaggctgtgcgtagaacagaggctttggagagcctgtttgacaagcacgag
gtggcaaaatcagcacttgttgatcagaagctcaaagcattacatttgaagcaagagcta
acggctaagatcaggtcaattaagaaaacaatgcgttcttcttctgcattggctttcaaa
gatgaactgaaggccaggaagcgagtattgcggaggcttggttacatcacaagtgatgat
gtcgtggaattgaaaggcaaggttgcttgtgaaatcagtagtgcaaatgaattgactctt
tcagagctgatgttcaatggggttttcaaggacataaaagtggaggaaatcatcgctctg
ctatcttgttttgtgtggcaagagaaacttcaggatgcagcaaagcctagggaagagctt
gagctgcttttcattcaattacaagacacagctcgaagggttgccaaggctcagcttgaa
tgcaaggtcgaaattgatgtggaaggctttgtgagttcgtttagaccagatattatggag
gctgtatatgcttgggcaaaaggatccaaattctacgagataatggaaataacacaggtt
ttcgaggggagtttgattagagcaattagaagactggaagaagttctgcaacaactaact
ctagcagcgaagtccattggtgaaactgaacttgaaaccaagtttgaagaagctgtttcc
aaaatcaagagggatatcgtctttgctgcgtctctatacttgtag
DBGET
integrated database retrieval system
