KEGG   Cucurbita maxima (winter squash): 111500232
Entry
111500232         CDS       T05246                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7-like
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03020  RNA polymerase
cmax03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111500232
  09124 Replication and repair
   03420 Nucleotide excision repair
    111500232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmax03021]
    111500232
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111500232
   03400 DNA repair and recombination proteins [BR:cmax03400]
    111500232
Transcription machinery [BR:cmax03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111500232
Messenger RNA biogenesis [BR:cmax03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111500232
DNA repair and recombination proteins [BR:cmax03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111500232
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 111500232
NCBI-ProteinID: XP_023007697
UniProt: A0A6J1KZF3
LinkDB
Position
Unknown
AA seq 176 aa
MFFHIVLERNTQLHPRHFGRGLRDSLVTKLMKEVEGTCSGRHGFVVAITGIEKVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEILEAFVSMVNKMGFFAEAGPIQIFVSNHLIPDDMEFQ
SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCVGTIKDDFMGVINDPSAA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgttcttccacattgtgttggagaggaacacgcagctgcatccacggcacttcgggcgt
gggctccgcgacagcctcgtaaccaagctcatgaaagaggtggagggcacttgcagcgga
cggcatggttttgtagtggccattacgggcatcgagaaagttgggaaagggttgatccgt
gatgggacgggctttgtgacctttcctgttaagtatcaatgtgttgtgtttcggcctttc
aagggtgaaatcttggaagcttttgtttctatggtaaacaagatgggtttctttgctgaa
gctggacccattcagatttttgtttctaatcatttgataccagatgatatggaatttcag
tccggagatattccaaactataccacttcagatggatcagttaagatccaaaaggacagt
gaagttcgattaaagataatcgggactcgagtagatgctactgaaattttttgtgttgga
accatcaaagacgatttcatgggtgtcataaatgatccttcggcggcttag

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