Caulobacter mirabilis: CSW64_09680
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Entry
CSW64_09680 CDS
T05166
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cmb
Caulobacter mirabilis
Pathway
cmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSW64_09680 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmb03019
]
CSW64_09680 (rnr)
03016 Transfer RNA biogenesis [BR:
cmb03016
]
CSW64_09680 (rnr)
Enzymes [BR:
cmb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CSW64_09680 (rnr)
Messenger RNA biogenesis [BR:
cmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSW64_09680 (rnr)
Transfer RNA biogenesis [BR:
cmb03016
]
Prokaryotic type
tRNA degradation factors
CSW64_09680 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ATQ42660
UniProt:
A0A2D2AXA9
LinkDB
All DBs
Position
complement(1968144..1970456)
Genome browser
AA seq
770 aa
AA seq
DB search
MAKRPPIKTTTRTPRTPRHPQGLPDRDTLLRFLREAGEADKADIAKAFGLKGSDRRALRE
MMRGLEAEGVLGKRGRRGFSEAGALPPVGVADVVERDPDGDLLVRLTKAGADAPLVRLAP
DRGKAVEAAPGLGDRVLVRFEPLENGETEARLIKRLGQSAHRVLGVIRKARREIRVEPVD
RKSKDSLLISEHDGRDLRDGDLVLAQVGSAERRYGPKLGKILEVVGREDEPRAASLIAIH
SHGIPTGFSEQAEAEAEAAEEPTLQGREDLRDFPFVTIDPADARDHDDAVFAHPDPDPKN
VGGWVVWVAIADVAAYVRHGMALDEIARDKGNSVYFPDRVEPMLPERLSNGLCSLREGEN
RATMAVRMVFNAAGKKVSHRFVRGLMRSAAKLSYEQAQAAIDGQPDDKTGPLVEGVLKPL
WTAYGVMLKGRNARSPLAIESDERRVVIGEDGQVASITKRPSLEAHRLIEEMMIQANVSA
AETLEQRRTPLIYRIHDTPSPEKIMALTDFLGTLDIPWTKGEAPTTRRFNKLLDDTREGP
HADIVNEVVLRTQMQAQYNAENIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALGLGS
DGLTDDDIKKIKETAETITHAERRAMAAERDATDRYVASFLADKVGAEFEGRITGVTRFG
LFVRLTDTGADGLVPVSSLGGEFFIHDDRTHSLIGERSGSRWPLGMTVQVRLREATPVTG
GLLFEMLSEAMPPDKTAPRPRLGVRRRMDPGRGGPKRGGVPKGVRKGKRR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacgcccccctatcaaaaccaccacccgaaccccgcgcacgccccgacatcct
cagggtctgccggatcgtgacacccttctccgtttccttcgcgaagccggcgaggccgac
aaggccgacatcgccaaggcgttcggcctgaagggctccgaccgccgcgccctgcgcgag
atgatgcgcggcctcgaggccgagggcgtcctcggcaagcgcggccgccgcggcttctcc
gaggccggcgccctgccccccgtcggcgtggccgacgttgtcgagcgcgatcccgacggc
gacctgctggttcgcctgaccaaggccggcgccgacgcgccgctggtccgcctggccccc
gatcgcggcaaggccgtcgaggccgcgcccggcctgggcgatcgcgtcctcgtccgcttc
gagccgctcgagaacggcgagaccgaagcccgcctgatcaagcgcctgggccagagcgcc
caccgcgtcctgggcgtcatccgcaaggcccgccgcgagatccgcgtcgagcccgtcgac
cgcaagagcaaggacagcctgctcatcagcgagcacgacggccgcgacctgcgcgacggc
gacctggtcctggctcaggtcggctccgccgagcgccgctacggccccaagctcggcaag
atcctggaggtcgtcggccgcgaggatgagcctcgggccgcctcgctcatcgccatccac
agccacggcatcccgaccgggttcagcgaacaggccgaagccgaggccgaagccgccgag
gagccgacgctgcaaggccgcgaggacctgcgcgacttcccgttcgtgaccatcgacccg
gccgacgctcgcgaccacgacgacgccgtcttcgcccatcccgaccccgacccgaagaat
gtcggcggctgggtggtctgggtcgccatcgccgacgtcgccgcctatgtccgccacggc
atggcgctggacgagatcgcccgcgacaagggcaacagcgtctatttccccgaccgcgtc
gagccgatgctgcccgagcggctgagcaacggcctgtgctctctgcgcgagggcgagaac
cgcgcgaccatggccgtgcggatggtgttcaacgccgccggcaagaaggtcagccaccgc
ttcgtgcgcggcctgatgcgctcggccgccaagctgagctacgagcaggcccaggccgcc
atcgacggccagccggacgacaagaccggcccgctggtcgagggcgtcctgaagccgctg
tggaccgcctacggcgtcatgctgaagggccgcaacgctcgctcgccgttggccatcgag
agcgacgagcgccgtgtggtcatcggcgaggacggccaggtcgcctcgatcaccaaacgc
ccctcgctggaggcgcaccgcctgatcgaggagatgatgatccaggccaacgtctcggcc
gccgagacgctggaacagcggcgcacgccgctgatctaccggatccacgacacgcccagc
cccgagaagatcatggcgctgaccgacttcctcggcacgctggacatcccctggaccaag
ggcgaggcgccgacgaccaggcggttcaacaagctgctggacgacacccgcgagggcccg
cacgccgacatcgtcaacgaggtggtcctgcgcacccagatgcaggcccagtacaatgcc
gagaacatcggccacttcggcttgaacctggccaagtacgcccacttcaccagcccgatc
cgccgctacgccgacctgatcgtccaccgcggcctgatccgcgcgctgggcctcggcagc
gacggtctgacggacgacgacatcaagaagatcaaggaaaccgccgagaccatcacccat
gccgagcgccgggcgatggcggccgagcgcgacgcgaccgaccgctacgtcgcctcgttc
ctggccgacaaggtcggggcggagttcgaggggcggatcaccggcgtcacccgtttcggc
ctgttcgtgcggctgaccgacaccggcgccgacggcctggttccggtctcgtcgctgggc
ggagagttcttcatccacgacgaccgcacccacagcctgatcggcgagcggagcgggtcg
cgctggcccctgggcatgaccgtccaggtccgcctgcgcgaggcgacgcccgtcaccggc
gggctgctgttcgagatgctcagcgaggccatgccgccggacaagaccgcgccgcgtccg
cgcctgggcgtccgtcgacggatggatcccggccgcggcggccccaagcgcggcggcgtc
cccaagggggtgcgcaagggcaagcggcgctga
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