Clavibacter nebraskensis: CMN_00530
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Entry
CMN_00530 CDS
T02530
Symbol
sigB
Name
(GenBank) RNA polymerase sigma 70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMN_00530 (sigB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmc03021
]
CMN_00530 (sigB)
Transcription machinery [BR:
cmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMN_00530 (sigB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
KORA
HNH_repeat
Motif
Other DBs
NCBI-ProteinID:
CCE74494
UniProt:
A0AAI8ZGH8
LinkDB
All DBs
Position
complement(518796..519839)
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AA seq
347 aa
AA seq
DB search
MTMTPTRPTAAETTSDTELDQVESVRPVDPYADSDLPEPSLVTPGASTDAVKDYLRQIGR
VPLLTAEQEVTVARRIEVGVLSQEVLDTRTDLTSAERREYQTLAQDGMRAKQHLVNANLR
LVVSIAKRYTGRGLPFLDLIQEGNMGLVRAVEKFDYQAGFKFSTYASWWIKQSITRGMAD
TSRTIRIPVHTVEHINRINAVQRELAVELGRDPSMEEIARESDTPVTKVRYLLDRAQEPM
SLQVLVGGSGGDGDTEMADLIEDADVTQPIDVVTQQLMAAHVMRLIDGLAERDAEVVRMR
FGLAGLEPRSLAFVSQQLGVTRERVRQIEKKVLAKLRIPELETYIRG
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgacaccgacccggcccacggccgccgagaccacctccgacaccgagctcgac
caggtcgagtccgtccgtcccgtcgatccgtacgcggactccgacctccccgagccgtcg
ctcgtcacccccggcgccagcaccgacgccgtcaaggactacctccgccagatcggccgc
gtgccgctgctcaccgccgagcaggaggtgaccgtggcccgccgcatcgaggtgggcgtg
ctgtcgcaggaggtcctcgacacccgcaccgacctcacctcggccgagcgccgcgagtac
cagacgctggcgcaggacgggatgcgcgccaagcagcacctcgtgaacgcgaacctgcgc
ctcgtcgtcagcatcgccaagcgctacacgggccgcggcctgccgttcctggacctcatc
caggagggcaacatgggactcgtccgcgccgtcgagaagttcgactaccaggccggcttc
aagttctcgacctacgcgtcgtggtggatcaagcagtccatcacccgcggcatggccgac
acgagccgcaccatccggatccccgtgcacacggtcgagcacatcaaccgcatcaacgcg
gtgcagcgcgagctcgccgtcgagctcggccgcgacccctccatggaggagatcgcacgc
gagtcggacacgcccgtcaccaaggtgcgctacctgctcgaccgcgcacaggagcccatg
tcgttgcaggtcctggtgggcggcagcggcggcgacggcgacaccgagatggccgacctc
atcgaggacgcggacgtcacgcagcccatcgacgtggtgacgcagcagctcatggccgcg
cacgtcatgcgcctcatcgacgggctggccgagcgcgacgccgaggtcgtgcggatgcgc
ttcggcctcgcgggcctcgagccgcgttcgctcgccttcgtgagccagcagctcggcgtg
acgcgcgagcgcgtgcgccagatcgagaagaaggtgctcgccaagctccgcatcccggag
ctggagacctacatccgcggctga
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