Clavibacter nebraskensis: CMN_01126
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Entry
CMN_01126 CDS
T02530
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMN_01126 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmc03021
]
CMN_01126 (rho)
03019 Messenger RNA biogenesis [BR:
cmc03019
]
CMN_01126 (rho)
Transcription machinery [BR:
cmc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CMN_01126 (rho)
Messenger RNA biogenesis [BR:
cmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CMN_01126 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
AAA_25
SAP
HeH
Motif
Other DBs
NCBI-ProteinID:
CCE75078
UniProt:
A0AAI8ZHL6
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All DBs
Position
1156549..1158372
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AA seq
607 aa
AA seq
DB search
MTDVDTRATTADLSALRVSQLQAIASELGIPGGSKLRKGELVTAISEIQAARGLTVPADE
AAPEAAAPAETGDATPAANEQADRQRDDRDADDQGGRRDDQGREGGRNRSRNRRNRDRGR
DQDDQQQNGRDQGQREQAPREPDADDEAQEEARTGRQRQNGRGQGDRTQDVRADQARADL
GRDDDRGGRSRYRDRKRGRGQGGDDFEPEVTEDDVLLPVAGILDVLDNYAFVRTSGYLPG
TNDVYVSLGQVKKHSLRKGDAIVGAIRQPRENESQSRQKYNAIVKIDSVNGLPPEEAANR
VEFGKLTPLYPQDRLSLETEPAKLTTRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAIAN
AIATNNPEVHLMVVLVDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRL
VELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSSALYPPKRFFGAARNIEHGGSL
TILATALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFPAVDVNASGTRREEMLMG
ADEVKVTWKLRRALAGLEQQQALEIVLSRLKETNSNVEFLMKVQASMPNTGNGVSHQSHG
HGAHEKG
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtcgacacccgcgccaccaccgcggacctgagcgcgctccgcgtctcccag
ctccaggcgatcgcctccgagctcgggatcccgggcggctccaagctccggaagggcgag
ctcgtgaccgcgatctccgagatccaggcagcccgggggctcaccgtccccgccgatgag
gcggcccccgaggccgccgcgcccgccgagaccggcgacgcgacccccgccgcgaacgag
caggccgaccgccagcgcgacgaccgcgacgccgacgaccagggcggacgccgcgacgac
cagggccgcgagggcggccgcaaccgcagccgcaaccgccgcaaccgcgaccgcggtcgc
gaccaggacgaccagcagcagaacggccgcgaccagggccagcgcgagcaggccccccgc
gagcccgacgccgacgacgaggcgcaggaggaggcccgcaccggccgccagcgccagaac
ggccgaggccagggcgaccgcacgcaggacgtgcgcgccgaccaggcccgcgccgacctc
ggccgcgacgacgaccgcggcggccgcagccggtaccgcgaccgcaagcgcggccgcggc
cagggcggcgacgacttcgagcccgaggtcaccgaggacgacgtcctcctgcccgtcgcg
ggcatcctcgacgtgctcgacaactacgcgttcgtccgcaccagcggctacctgcccggc
acgaacgacgtgtacgtctcgctcggccaggtcaagaagcactcgctgcgcaagggcgac
gccatcgtcggcgccatccgccagccgcgcgagaacgagagccagagccgccagaagtac
aacgcgatcgtgaagatcgactcggtcaacggcctgccgcccgaggaggccgcgaaccgc
gtcgagttcggcaagctcacgccgctgtacccgcaggaccgcctcagcctcgagaccgag
ccggccaagctgaccacgcggatcatcgacctcgtgtcgccgatcggcaagggccagcgc
ggcctcatcgtctcgccgcccaaggccggcaagacgctcgtgctccaggccatcgcgaac
gccatcgccaccaacaaccccgaggtccacctcatggtcgtgctggtcgacgagcgtccc
gaggaggtcaccgacatgcagcgcacggtgaagggcgaggtcatcgcctcgaccttcgac
cgtcccgccgaggaccacaccacggtcgccgagctcgccatcgagcgcgccaagcgcctc
gtggagctcggccacgacgtggtcgtgctgctcgactccatcacccgcctcggtcgcgcg
tacaacctcgcggcgcccgcgtcgggccggatcctctcgggcggcgtcgactcgtcggcg
ctctacccgccgaagcgcttcttcggcgccgcgcgcaacatcgagcacggcggatcgctc
acgatcctcgccacggcgctcgtggagaccggatccaagatggacgaggtcatcttcgag
gagttcaagggcaccggcaacatggagctccgcctctcccgcgccctcgccgacaagcgg
atcttccccgccgtcgacgtcaacgcctccggcacgcgccgcgaggagatgctcatgggc
gccgacgaggtcaaggtcacctggaagctgcgccgcgcccttgccgggctcgagcagcag
caggccctcgagatcgtcctcagccgcctcaaggagacgaactccaacgtcgagttcctc
atgaaggtccaggcctccatgcccaacaccggcaacggcgtgtcccaccagagccacggg
cacggcgcgcacgagaagggctga
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