Clavibacter nebraskensis: CMN_01170
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Entry
CMN_01170 CDS
T02530
Symbol
uvrD3
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03420
Nucleotide excision repair
cmc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMN_01170 (uvrD3)
03430 Mismatch repair
CMN_01170 (uvrD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmc03400
]
CMN_01170 (uvrD3)
Enzymes [BR:
cmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMN_01170 (uvrD3)
DNA repair and recombination proteins [BR:
cmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CMN_01170 (uvrD3)
MMR (mismatch excision repair)
Other MMR factors
CMN_01170 (uvrD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
CCE75122
UniProt:
A0AAI8ZHN4
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All DBs
Position
1201444..1203366
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AA seq
640 aa
AA seq
DB search
MTDQLVPGTPGRDPYGSTAPGALPAPVSLGPAAASAEEPVEEARTAESLLEALDDQQRLA
AEALLGPVVVLAGAGTGKTRAITHRIAYGIQAGVYPPNRVMALTFTSRAAAELRGRLREL
GAGPVAARTFHAAALKQLNFFWPQVVGGTMPRLIESKGRMLGHAAESLRLRLDTAALRDM
AAEVEWRKVSMISIEQYGLAARTTRTLPPQLDADQAVALLQAYEDIKDQRRQLDFEDVLL
ATAGMIEAEPWVAQQVREQYRFFVVDEYQDVSPLQQTILDLWMGDRRDLCVVGDASQTIY
SFAGAKSAYLLDFASRFPEATVVRLERNYRSTSGITEAANRLMRGRPGALTLVSADADPD
GDGTGTASARAAKGRGSAAVPGRGEGFRAPQVSAFPSDGAEARAIAGAIAQQIASGIAPE
DIAVLYRMNGQSAVLEQALGDAGVSYQVRGSQRFFDRPEIKQALLALRGASVSISGEPLF
KSVSDVLRGLGWSQQPPEQPGAVRDRWESLDAIMGLAERMPAGSTFRAFTDELLERQAGQ
HEPTVSAVTLATLHSAKGLEWEHVYLMGLSEGLVPISYAQTLEAVDEERRLLYVGITRAR
SGLRLSWSRSGPQRSGQREPSRFLAELDTRIAGGGAKRGA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaccagctcgtccccggcacccccgggcgcgacccctacgggtccaccgcgccc
ggcgccctccccgcacccgtgtccctcggccctgctgccgcgtccgcggaggagcccgtc
gaggaggcccgcaccgcggagtccctgctcgaggcgctcgacgaccagcagcggctcgcc
gccgaggcgctcctcggccccgtggtcgtgctcgcgggcgccggcacgggcaagacgcgc
gccatcacgcaccgcatcgcctacgggatccaggccggcgtctacccgcccaaccgcgtc
atggcgctcaccttcacctcgcgcgccgcggccgagctccgcgggcgcctgcgcgagctc
ggcgccggacccgtggccgcgcgcaccttccacgcggcggccctcaagcagctcaacttc
ttctggccgcaggtcgtcggcggcaccatgccgcgcctcatcgagagcaagggccggatg
ctcgggcatgcggccgagtccctccgcctccgcctcgacacggccgcgctccgcgacatg
gccgccgaggtcgagtggcgcaaggtctcgatgatctccatcgagcagtacggcctcgcc
gcgcgcaccacccgcacgctcccgccgcagctcgacgccgaccaggccgtcgcgctcctc
caggcgtacgaggacatcaaggaccagcgccgccagctcgacttcgaggacgtgctgctc
gcgaccgcggggatgatcgaggccgagccctgggtggcgcagcaggtgcgcgagcagtac
cgcttcttcgtggtcgacgagtaccaggacgtctcgccgctgcagcagacgatcctcgac
ctctggatgggcgaccgccgcgacctctgcgttgtcggcgacgccagccagaccatctac
tcgttcgcgggcgcgaagagcgcgtacctcctcgacttcgcgtcgcgtttccccgaggcg
acggtggtccggctggagcgcaactaccggtcgacctccggcatcaccgaggcggcgaac
cggctcatgcgcggccggccgggcgcgctcacgctcgtgtcggcggacgcggatcccgac
ggcgacggcaccggcacggcctccgcccgcgccgcgaagggccgcggatccgccgccgtc
cccggccgcggcgagggcttccgcgcgccccaggtgagcgcgttcccctccgacggcgcc
gaggcgcgcgcgatcgccggcgccatcgcccagcagatcgcctccggcatcgcgcccgag
gacatcgccgtgctctaccgcatgaacggccagtccgcggtgctcgagcaggccctcggc
gacgcgggcgtcagctaccaggtgcgcggatcccagcgcttcttcgaccgccccgagatc
aagcaggcgctcctcgccctccgcggcgcgtccgtctccatctccggcgagccgctgttc
aagtcggtgagcgacgtgctgcgcggcctcggctggagccagcagccgcccgagcagccg
ggcgccgtgcgcgaccgctgggagtccctcgacgcgattatgggcctcgccgagcgcatg
cccgcgggcagcaccttccgcgccttcaccgacgagctcctcgagcgccaggccgggcag
cacgagccgaccgtctccgccgtcacgctcgcgacgctgcactccgccaagggcctcgag
tgggagcacgtctacctgatggggctgagcgaggggctcgtgcccatcagctacgcgcag
acgctcgaggcggtcgacgaggagcggcgcctcctctacgtcgggatcacgcgcgcgcgg
tccgggctgcggctctcctggagccggagcggaccgcagcgatccggtcagcgggagccg
tcgcggttcctggcagagctcgacacgcgcatcgcgggtgggggcgcgaagcgcggcgcg
tga
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