Clavibacter nebraskensis: CMN_01331
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Entry
CMN_01331 CDS
T02530
Symbol
fpgA
Name
(GenBank) Cmm ortholog CMM_1359; Cms ortholog CMS_0747
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CMN_01331 (fpgA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmc03400
]
CMN_01331 (fpgA)
Enzymes [BR:
cmc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CMN_01331 (fpgA)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CMN_01331 (fpgA)
DNA repair and recombination proteins [BR:
cmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CMN_01331 (fpgA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
DZR
DUF7573
Cas12f1-like_TNB
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
CCE75282
UniProt:
A0AAI8ZHA2
LinkDB
All DBs
Position
1375085..1376020
Genome browser
AA seq
311 aa
AA seq
DB search
MPELPEVEVVRAGLEPAVSGARITGVEILDARSLKRHDPIEGAFVDLLVGRVITSAVRRG
KFMWLPLEPDAGRDGTGPRALVTHLGMSGQVLLREPGSDPEGLLRIRMGIEHPVHGELVV
AFVDQRIFGSMAVDRLVATPDGHAGGRGSAAALVPTQVAHIARDPLDPAFDDELLLDRLG
RRRTGIKRALLDQTLVSGIGNIYADEALWAARIHYALSTDQLGRGRALRLLAEVRTVLAR
ALAEGGTSFDAQYVNVNGASGYFSHSLNAYGQQGKPCPRCGTPIVREAFMNRGSHLCPHC
QVLPDPDTAAA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctccccgaggtcgaggtcgtccgcgccggcctcgaaccggccgtcagcgga
gcgcgcatcacgggggtcgagatcctcgacgcgcgctccctcaagcggcacgacccgatc
gagggcgcgttcgtcgacctgctggtcggccgcgtgatcacgtcggccgtccgccgcggc
aagttcatgtggctgccgctcgagcccgacgccggacgcgacgggacgggaccgcgcgcg
ctcgtcacccacctcggcatgagcgggcaggtgctcctccgcgagcccggctccgacccg
gagggcctgctgcggatccgcatgggcatcgagcatcccgtccacggcgagctcgtggtc
gccttcgtcgaccagcggatcttcggctcgatggccgtcgaccgcctcgtcgccactcca
gacgggcacgcgggcggacgcggatccgccgccgccctcgtgccgacgcaggtcgcccac
atcgcgcgggaccccctcgacccggcgttcgacgacgaactgctgctcgaccggctcggg
cgccgccgaacggggatcaagcgcgcgctgctcgaccagacgctcgtgagcggcatcggc
aacatctacgcggacgaggcgctgtgggccgcgcggatccactacgcgctgtcgacggac
cagctcggccgggggcgcgccctgcggctgctcgccgaggtgcggaccgtgctggcccgg
gcattggccgagggcgggacgagcttcgacgcgcagtacgtcaacgtcaacggcgcgtcc
ggctacttctcgcactcgctgaacgcctacgggcagcagggcaagccctgcccgcgctgc
ggcacgcccatcgtgcgcgaggccttcatgaaccgcggctcgcacctgtgcccgcactgc
caagtgctgccggatccggacacggcggccgcctga
DBGET
integrated database retrieval system
