Clavibacter nebraskensis: CMN_01465
Help
Entry
CMN_01465 CDS
T02530
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMN_01465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmc03019
]
CMN_01465
03009 Ribosome biogenesis [BR:
cmc03009
]
CMN_01465
Enzymes [BR:
cmc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CMN_01465
Messenger RNA biogenesis [BR:
cmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMN_01465
Ribosome biogenesis [BR:
cmc03009
]
Prokaryotic type
rRNA processing factors
CMN_01465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
CCE75413
UniProt:
A0AAI9EKD1
LinkDB
All DBs
Position
1524175..1527171
Genome browser
AA seq
998 aa
AA seq
DB search
MVERDENTGRRRPSLFERLTGRRAATPAAAGTGGTPALPASATPEASGSPAASEAKGHTL
NENDDTRSTPDETERPVVRRSRRASTPASAPAVAQPDDASVDASAAAPAPADDAEAEAPA
TAQPAARAPRKRAPRKAAVPAEQEAPAAEQPAAEASDDERATAEPVDAPAAEAPAAPARA
VPSLSVFFQAPDIAPLPPRRERDDRRDDSHDEDDDLDRDERPLRSSRRGGRGQDRSTGRD
GRGRDSRDDAHDDDEDDSPSVRRRARRRSGEEGRDGDDAPGTVVKVRTPREPELITEPQR
IKGSTRLEAKKQRRRDGRDAGRRRPVLTESEYLARRESVDRSMIVRSRDGKIQIGVLEDQ
VLVEHYVARADEASLIGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYSGEVDWDAANADK
GGGSHARRIEVALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNGISRK
LPDTERARLKKTLKEVLPENVGVIVRTAAEGATEEQLKLDVERLTSQWAEISRQVEKAQA
PALLHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQTYSGDAD
SFDHYRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNN
LEAAEEIVRQMRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLG
LVQMTRKKLGLGLLESFSENCETCAGRGIIIHHDPLMAHKQTPQEPVQGQGRRRGGKGQQ
EHGAGTGGGGGRGNGGGQAQQQQRTPAASTHSITDDARNALAKIATSTIQTVNEAIDRVE
DVVRTPDEAAEAAPRAEAAPVEEQPRGERPRRSRGGRGRASSATAEATERQEPQAPAAEA
PSAPAEDPTPADAAVEEPALSTLEPREAIRLEPVQILDIPVASTRTAPRRVSSADAEQLL
GSVLDALPQPKEPGQGRSRSRRVSTQTLTTPAPADDAS
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggtggagagagacgagaacaccggcaggaggcgacccagcctcttcgagcggctcacg
ggccgccgcgccgcgacgcccgcggcggcggggaccggcggcacgcccgccctccccgcg
tccgcgacccccgaggcgagcggcagtcccgccgcctccgaagcgaagggccacaccctg
aacgagaacgacgacacccggtccacgcccgacgagacggagaggccggtcgtccgacgc
tcccgccgcgcgagcacccccgcatccgcgcccgcggtcgcccagccggacgacgccagc
gtcgacgcgtccgccgcggcccccgcacccgcggacgacgccgaggcggaggccccggcc
accgcgcagcccgccgcccgggcgccccggaagcgcgccccgcgcaaggcggccgtcccg
gccgagcaggaggcgcccgccgccgagcagcccgccgccgaggcgtcggatgacgagcgc
gcgacagccgagccggtcgacgcgcccgccgcggaggcccccgcggctccggcacgcgcc
gtcccttccctctccgtcttcttccaggccccggacatcgcgccgctgcctccccgccgc
gagcgcgacgaccgccgcgacgattcccatgacgaggacgacgacctcgaccgcgacgag
cgccccttgcgctcgtcgcgccgcggcggccgtggacaggaccgcagcaccggccgcgac
ggccgtggccgtgacagccgcgacgacgcccacgacgacgacgaggacgactcgccgtcg
gtccgccgccgcgcgcgccgccgctccggcgaggagggccgcgacggcgacgacgcgccc
ggcacggtcgtcaaggtccgtacgccgcgcgagcccgagctcatcaccgagccgcagcgg
atcaagggatccacgcgcctcgaggccaagaagcagcgccgccgcgacggccgcgacgcc
ggacgccgccgtccggtcctcaccgagtccgagtacctggcgcgccgcgagtccgtcgac
cgcagcatgatcgtgcgctcgcgcgacggcaagatccagatcggcgtgctcgaggaccag
gtgctcgtcgagcactacgtcgcccgcgccgacgaggcgtcgctcatcggcaacgtctac
ctcggccgcgtccagaacgtgctgcccagcatggaggccgccttcatcgacatcggccgc
ggtcgcaacgccgtgctctactccggcgaggtcgactgggacgccgccaacgccgacaag
ggcggcggcagccacgcgcgtcgcatcgaggtcgcgctgaagcccggcgaccgcgtgctc
gtccaggtcaccaaggacccggtcggccacaagggcgcccgcctcacgagccaggtgagc
ctccccggccgctacctcgtgtacgtgcccaacgggtccatgaacggcatcagccgcaag
ctccccgacaccgagcgcgcgcgcctcaagaagaccctcaaggaggtgctgcccgagaac
gtgggcgtcatcgtccgcaccgccgccgagggcgcgacggaggagcagctgaagctcgac
gtcgagcgcctcacgtcgcagtgggccgagatcagccgccaggtcgagaaggcgcaggcg
cccgcgctcctgcactcggagcccgacctgctgctgaagatcatccgcgacgtcttcaac
gaggacttccgcgagctcgtgatcgacggcggcgacgcccaggagatcatcgagggctac
ctccgcggcgtggcgcccgacctcatcgaccgggtgcagacgtactcgggcgacgcggac
tcgttcgaccactaccgcgtcagcgagcagatcgagaaggcgctcgaccgcaaggtgtgg
ctgccctccggcggatcgctcgtcatcgaccgcaccgaggccatgaccgtggtcgacgtc
aacacgggcaagttcgtcggctccggcggcaacctcgaggagaccgtcaccaagaacaac
ctcgaggccgcggaggagatcgtccgccagatgcgcctgcgcgacatcggcgggatcatc
gtcgtcgacttcatcgacatggtgctcgagtccaaccgcgacctcgtgctccgccgcctg
gtggagtgcctcagccgcgaccgcaccaagcaccaggtcgccgaggtcacctcgctcggc
ctcgtgcagatgacccgcaagaagctcggcctgggcctcctcgagtcgttctccgagaac
tgcgagacctgcgccgggcgggggatcatcatccaccacgacccgctcatggcccacaag
cagacgccgcaggagcccgtgcagggccagggccgccgtcgcggcggcaagggccagcag
gagcacggcgccggcactggcggcggcggcggacgcgggaacggcggcggtcaggcgcag
cagcagcagcgcacgccggcggccagcacccacagcatcaccgacgacgcccgcaacgcg
ctcgccaagatcgccacgagcaccatccagacggtgaacgaggccatcgaccgggtcgag
gacgtcgtgcgcaccccggacgaggccgccgaggcggcaccgcgggccgaggccgcgccc
gtcgaggagcagccgcgcggcgaacgcccgcgtcggagccgcgggggccggggacgcgcg
tcatccgcgaccgccgaggcgacggagcggcaggagccgcaggcacccgccgccgaggcg
ccgtccgctcccgccgaggacccgacgcccgccgacgcagccgtggaggagcccgccctg
tcgacgctcgagccgcgcgaggccatccgcctcgagccggtgcagatccttgacatcccg
gtcgcgagcacccgcacggccccgcgccgcgtgagctcggccgacgcggagcagctcctc
ggctctgtgctcgacgccctgccgcagcccaaggagcccggccagggccgctcgcgcagc
cgccgggtctcgacgcagacgctcacgacgccggccccggccgacgacgcgagctga
DBGET
integrated database retrieval system
