Clavibacter nebraskensis: CMN_01622
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Entry
CMN_01622 CDS
T02530
Symbol
lpdB
Name
(GenBank) Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc00010
Glycolysis / Gluconeogenesis
cmc00020
Citrate cycle (TCA cycle)
cmc00260
Glycine, serine and threonine metabolism
cmc00280
Valine, leucine and isoleucine degradation
cmc00310
Lysine degradation
cmc00380
Tryptophan metabolism
cmc00620
Pyruvate metabolism
cmc00630
Glyoxylate and dicarboxylate metabolism
cmc00640
Propanoate metabolism
cmc00670
One carbon pool by folate
cmc00785
Lipoic acid metabolism
cmc01100
Metabolic pathways
cmc01110
Biosynthesis of secondary metabolites
cmc01120
Microbial metabolism in diverse environments
cmc01200
Carbon metabolism
cmc01210
2-Oxocarboxylic acid metabolism
cmc01240
Biosynthesis of cofactors
Module
cmc_M00009
Citrate cycle (TCA cycle, Krebs cycle)
cmc_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
cmc_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
cmc_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
CMN_01622 (lpdB)
00020 Citrate cycle (TCA cycle)
CMN_01622 (lpdB)
00620 Pyruvate metabolism
CMN_01622 (lpdB)
00630 Glyoxylate and dicarboxylate metabolism
CMN_01622 (lpdB)
00640 Propanoate metabolism
CMN_01622 (lpdB)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
CMN_01622 (lpdB)
00280 Valine, leucine and isoleucine degradation
CMN_01622 (lpdB)
00310 Lysine degradation
CMN_01622 (lpdB)
00380 Tryptophan metabolism
CMN_01622 (lpdB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
CMN_01622 (lpdB)
00670 One carbon pool by folate
CMN_01622 (lpdB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmc04147
]
CMN_01622 (lpdB)
Enzymes [BR:
cmc01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
CMN_01622 (lpdB)
Exosome [BR:
cmc04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
CMN_01622 (lpdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
HI0933_like
DAO
AlaDh_PNT_C
GIDA
FAD_oxidored
FAD_binding_2
Amino_oxidase
3HCDH_N
2-Hacid_dh_C
Motif
Other DBs
NCBI-ProteinID:
CCE75568
UniProt:
A0AAI8ZII5
LinkDB
All DBs
Position
complement(1692255..1693628)
Genome browser
AA seq
457 aa
AA seq
DB search
MSEQNFDVVVLGGGSGGYAAALRAVQLGKTVGLVEKGKLGGTCLHRGCIPTKALLHSAEV
ADVSRESEKYGVNVSFDGVDIARVNAYREAIVASKYKGLQGLIKARGITVIEGEGRLTSG
TTVQVGDQTITGKSVVLATGSYSRTLPGLEIGGRVITSEQALELDYIPKKVAILGGGVIG
VEFASVWRSFGVDVQIIEALPHLVPNEEESISKQFERAFRKRGIAFSLGVRFKSVTQDDQ
GVQVALEDGTTYDADLLLVAVGRGPATQGLGFEEAGVKTDRGFVLTDERLQTSVPGVYAV
GDIVPGLQLAHRGFQQGIFVAEEIAGNKPVVVEDINIPKVTYSDPEVASVGYSEAKAVEK
FGADKVSSYEYNLGGNGKSSILGTAGSIKVVRVQDGPVVGIHMIGARVGELIGEGQLIVN
WEAYPEDVAGLVHAHPTQNEALGEAHLALAGTPLHAL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaacagaactttgacgtggtggtgctcggcggcgggagtggcggctacgcggca
gcgctccgtgcggtgcagctgggcaagaccgtgggcctcgtggagaagggcaagctgggc
ggcacgtgcctccaccgcggctgcatccccaccaaggccctcctgcactcggccgaggtg
gccgacgtgtcgcgggagtcggagaagtacggcgtcaacgtctcgttcgacggcgtcgac
atcgcccgcgtgaacgcgtaccgcgaggcgatcgtcgccagcaagtacaagggcctgcag
ggtctcatcaaggcccggggcatcaccgtcatcgagggcgagggccgcctgacgtccggc
accaccgtgcaggtcggcgaccagaccatcaccgggaagagcgtcgtcctcgcgaccggc
tcctactcccgcacgctgccgggcctcgagatcggcggccgcgtcatcacgagcgagcag
gccctcgagctcgactacatcccgaagaaggtcgcgatcctcggcggcggcgtcatcggc
gtcgagttcgcctccgtctggcgctccttcggcgtcgacgtgcagatcatcgaggccctg
ccccacctcgtcccgaacgaggaggagtccatcagcaagcagttcgagcgggcgttccgc
aagcgcggcatcgcgttctcgctcggcgttcgcttcaagtcggtcacgcaggacgaccag
ggcgtccaggtcgccctcgaggacggcaccacctacgacgccgacctcctgctcgtcgcc
gtgggccgcggtccggcgacccagggcctcggattcgaggaggcgggcgtcaagacggac
cgcggattcgtgctgacggacgagcgcctccagaccagcgtccccggcgtctacgccgtc
ggcgacatcgtccccggcctgcagctcgcccaccgcggcttccagcaggggatcttcgtc
gccgaggagatcgcgggcaacaagcccgtggtcgtcgaggacatcaacatccccaaggtc
acctactccgaccccgaggtcgcgagcgtcggctacagcgaggccaaggccgtcgagaag
ttcggcgccgacaaggtctccagctacgagtacaacctcggcggcaacggcaagagctcc
atcctgggcacggctggatccatcaaggtggtccgcgtgcaggacgggcccgtcgtcggc
atccacatgatcggcgcccgggtcggcgagctcatcggcgagggccagctcatcgtgaac
tgggaggcctaccccgaggacgtcgccggcttggtgcacgcccaccccactcagaacgag
gcgctcggcgaggcccacctggctctcgccggaacgcctctgcacgccctgtag
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