Clavibacter nebraskensis: CMN_01664
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Entry
CMN_01664 CDS
T02530
Name
(GenBank) RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
cmc
Clavibacter nebraskensis
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmc03019
]
CMN_01664
Enzymes [BR:
cmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CMN_01664
Messenger RNA biogenesis [BR:
cmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CMN_01664
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
nSTAND3
DUF6634
AAA_30
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
CCE75609
UniProt:
A0AAI9EKE7
LinkDB
All DBs
Position
complement(1741412..1743883)
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AA seq
823 aa
AA seq
DB search
MTDQLSPAERYAASRSRRSLPLLESFASGLRFDLDPFQRAAAESLENGRSVLVAAPTGAG
KTVVAEFAVYLAMQRPSAKIFYTAPMKALSNQKYAELVAEYGPDEVGLLTGDTNVNSRAR
MVVMTTEVLRNMLYADSDLLRDLAFVIMDEVHYLADRFRGAVWEEVIIHLPQTVRMISLS
ATVSNAEEFGDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMVDLFDSSGLAATHRVNPE
LVRMTHGGGREAVRVRGGQGHSRGRAGAGGGSGRKAPGPWDRGRMDRPEVVALLEERNLL
PAIFFIFSRAGCDAAVKQVLRAGVRLTHAHERDEIRAVVEERCRTLRDEDLAVLGYWEWL
EGLERGVAAHHAGMLPAFKEVVEELFQRKLVKAVFATETLALGINMPARTVVLEQLEKFN
GEARVPLTPGEYTQLTGRAGRRGIDVEGHAVIQWKDGLDPQAVASLASRRTYPLNSSFRP
TYNMAVNLIDQFGRERTREVLESSFAQFQADRAVVDLARKVRTQEESLAGYEKAMVCHLG
DFREYSGLRRELSDLERATAARADMQQPGQHGERDKRQRQLTDLRRRMKAHPCHACKDRE
SHARWAERWWRLKRQTDALGQQIRTRTNAVAKVFDRITELLLSLGYLKRAADGQVAPTPN
GRMLKRIYGDRDLLVAECLRTQVWVDLDPAALAAMAASLVYQPRRDEGDRNDRNLPRGPF
RAALERTEEIWSRLDDVERERRLPTTDPLSTGLCAPMHRWARGGSLDVVLDEADLAAGDF
VRWTKQTIDLLDQLSIVADGPVSRNARTALDSIRRGIVAYSSV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaccagctctcgcccgcggaacgctacgcggcctcccgcagccgccgcagcctc
ccgctcctcgagtcgttcgcgagcggcctgcgcttcgacctcgacccgttccagcgcgcc
gccgcggagtcgctggagaacggccgcagcgtgctcgtcgcggcgccgaccggtgccggc
aagacggtcgtcgccgagttcgccgtctacctcgcgatgcagcggccgagcgccaagatc
ttctacacggcgccgatgaaggcgctgagcaaccagaagtacgccgagctcgtggccgag
tacggccccgacgaggtgggcctgctcacgggcgacaccaacgtcaacagccgcgcccgc
atggtcgtcatgacgaccgaggtgctgcgcaacatgctctacgccgactccgacctgctc
cgcgacctcgcgttcgtgatcatggacgaggtgcactacctcgccgaccgcttccgcggc
gccgtgtgggaggaggtcatcatccacctcccgcagaccgtgcggatgatctcactgagc
gccacggtctcgaacgccgaggagttcggcgactggctgcaggcggtgcgcggcgagacg
gacgtcatcgtctccgaggagcgacccgtgcccctcgagcagcacgtgatcgtgcggcac
cgcatggtcgacctcttcgactcgtcgggcctcgccgcgacgcaccgcgtcaaccccgag
ctggtgcgcatgacgcacggcggcggacgcgaagccgtgcgcgtgcgcggcggccagggg
cactcgcgcggtcgcgcgggggcgggcggcggatccggccgcaaggcccccgggccgtgg
gaccgcggccgcatggaccgccccgaggtcgtcgccctcctcgaggagcggaacctgctc
ccggccatcttcttcatcttcagccgcgccggctgcgacgccgccgtcaagcaggtgctc
cgtgcgggcgtccggctcacgcacgcgcacgagcgcgacgagatccgcgccgtcgtggag
gagcgctgccgcacgctccgcgacgaggacctcgcggtcctcggctactgggagtggctc
gagggcctggagcgcggcgtcgcggcgcaccacgcgggcatgctgccggcgttcaaggag
gtcgtcgaggagctgttccagcggaagctcgtgaaggccgtcttcgcgacggagaccctc
gcgctcggcatcaacatgcccgcgcgcacggtcgtgctggagcagctcgagaagttcaac
ggcgaggcgcgcgtgccgctgacgccgggggagtacacgcagctcaccggacgcgccggc
cgccgcggcatcgacgtcgagggtcacgccgtcatccagtggaaggacgggctggatccg
caggccgtcgcctcgctcgcctcccgccgcacgtacccgctcaactcgagcttccggccg
acctacaacatggccgtcaacctcatcgaccagttcggccgggagcgcacgcgcgaggtg
ctggagtcgtcgttcgcgcagttccaggccgaccgcgccgtggtggacctcgcgcgcaag
gtgcgcacgcaggaggagtcgctcgccggctacgagaaggcgatggtctgccacctcggc
gacttccgggagtactccggcctccgccgcgagctcagcgacctcgagcgcgccaccgcg
gcccgcgccgacatgcagcagccgggccagcacggcgagcgggacaagcggcagcgccag
ctgaccgacctccgccgccggatgaaggcgcacccctgccacgcgtgcaaggaccgcgag
tcgcacgcgcgctgggccgagcgctggtggcgcctcaagcggcagacggatgcgctgggc
cagcagatccgcacgcgcaccaacgcggtggccaaggtcttcgaccggataaccgagctg
ctgctctcgctcggctacctcaagcgcgccgccgacggtcaggtcgcgccgacgcccaac
ggccggatgctcaagcgcatctacggcgaccgcgacctcctcgtcgccgagtgcctgcgc
acgcaggtgtgggtggacctcgaccccgccgccctcgccgccatggccgcctcgctcgtc
taccagccgcgccgcgacgagggcgaccgcaacgaccggaacctgccgcgcggcccgttc
cgcgcggcgctcgagcgcacggaggagatctggtcgcgcctcgacgacgtcgagcgcgag
cgccgcctgccgacgaccgacccgctgtccaccgggctgtgcgcgccgatgcaccgctgg
gcgcgcggcggcagcctggacgtcgtgctcgacgaggccgatctcgccgccggcgacttc
gtgcgctggacgaagcagacgatcgatctgctcgaccagctctcgatcgtggccgacggt
cccgtatcccggaacgcccgcacggcgctcgacagcatccggcgcggcatcgtcgcgtac
tcgtcggtgtga
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