Clavibacter nebraskensis: CMN_01828
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Entry
CMN_01828 CDS
T02530
Symbol
dnaE2
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc03030
DNA replication
cmc03430
Mismatch repair
cmc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMN_01828 (dnaE2)
03430 Mismatch repair
CMN_01828 (dnaE2)
03440 Homologous recombination
CMN_01828 (dnaE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmc03032
]
CMN_01828 (dnaE2)
03400 DNA repair and recombination proteins [BR:
cmc03400
]
CMN_01828 (dnaE2)
Enzymes [BR:
cmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CMN_01828 (dnaE2)
DNA replication proteins [BR:
cmc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CMN_01828 (dnaE2)
DNA repair and recombination proteins [BR:
cmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CMN_01828 (dnaE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
HROB
Motif
Other DBs
NCBI-ProteinID:
CCE75773
UniProt:
A0AAI9EJG4
LinkDB
All DBs
Position
complement(1919401..1922913)
Genome browser
AA seq
1170 aa
AA seq
DB search
MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQKMPAVAITDHGNVFGAFDFWKQAKA
AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL
SSRASLEGYYFKPRMDRELLSTYAKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFRDI
FGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLCVQ
SGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYMPR
YPVPEGESEQTWFVKEVERGLVRRYPRGFSDDVRKRADYEVGVIAQMGFPGYFLVVADFI
NWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDRVSMPDFDVDFDD
RRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMGDKLTKAMPPAIM
GKDIPLSGILDTEHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKRQWGVHAAGVIMS
SEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIIDDALNNIESNRGE
KLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFEDISAVIALYRPGP
MGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVMSVAQKLAGFTLA
QADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPFSDYAFNKAHSAA
YGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKVLPPDVNESIGFF
AAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLPVANKRTVESLIK
AGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEPQHARKVPERPEW
AKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMDGETVTLAGLLTS
VQHRTARNSGNQYGMVQLEDFGGEITCMFMGKAYQEFAPALQSDTVVVIRGRVSTRDDGM
NIHAFSMFQPDLGQSLGSGPLLISLAENRATTETVMGLNDVLIRHSGDTEVRLQLVKGDT
GRVFEIPFPVTVSADLYGELKSLLGPNCLG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgcaacgactcgttcgtccacctccacgtccacagcgagtactcgatgctcgac
ggggcggcccgcgtcggcccgctcgtgcaggccgcggccgagcagaagatgccggccgtc
gccatcaccgaccacggcaacgtgttcggcgccttcgacttctggaagcaggcgaaggcc
gcgggcgtgaagcccatcatcggcaccgaggcgtacatcacgccgggcacgcaccgcggc
gaccgcacccgcatccggtggggcaacggcggccaggacgacgtctccggatccggcgcc
tacacgcacctcacgatgctcgccgagacgaccgagggcatgcacaacctgttccggctc
tcgtcgcgcgcctcgctcgagggctactacttcaagccccgcatggaccgcgagctcctc
agcacgtacgcgaagggcctcatcgccaccaccggctgcccgtccggcgaggtgcagacg
cgcctccgcctcggccagtacgacgaggccgtgaaggccgccgcggacttccgcgacatc
ttcggggccgagaactacttctgcgaggtcatggaccacgggctcggcatcgagcgccgc
atcatgaccgacctccaccgcctcgcgaaggacctcggcctcccgctcgtcgcgaccaac
gacctgcactacacgcacgagcacgacgccacgagccacgcggccctcctgtgcgtccag
tccggcacgacgctcgacgaccccaaccgcttcaagttcgacgccgacgagttctacctg
aagaccgcgcagcagatgcgccacctcttccgcgaccacgaggaggcatgcgacaacacg
ctcctcatcgccgagcggtgcgacgtgcagttcaacgagtccgccaactacatgccgcgc
tacccggtgcccgagggcgagagcgagcagacctggttcgtgaaggaggtcgagcgcggc
ctcgtccggcgctacccgcgcggcttctccgacgacgtgcgcaagcgcgcggactacgag
gtcggggtcatcgcgcagatgggcttcccgggctacttcctcgtcgtcgccgacttcatc
aactggtcgaaggagaacgggatccgcgtgggccccggccgcgggtcgggcgccggctcg
atggtcgcgtacgccatgggcatcaccgacctcgacccgctggagcacggcctgctgttc
gagcggttcctcaaccccgaccgcgtctccatgcccgacttcgacgtcgacttcgacgac
cgtcgccgcggcgaggtcatccgctacgtgaccgacaagtacggcgacgagcgcgtcgcg
cagatcgtcacgtacggcaccatcaaggccaagcaggcgctcaaggactcgagccgcgtg
ctcggctacccgttctccatgggcgacaagctcaccaaggccatgccgcccgcgatcatg
ggcaaggacatcccgctgtccggcatcctcgacaccgagcacccgcgctaccgcgaggcc
ggcgacttccgcgaggtgctcgcgatggaccccgaggcgcagaaggtcttcgagaccgcg
cagggcatcgagaacctcaagcggcagtggggcgtgcacgcggccggcgtcatcatgtcg
agcgagccgctcatcgacatcatcccgatcatgaagcgggagcaggacggccagatcgtc
acgcagttcgactaccccgcgtgcgagtcgctcggcctcatcaagatggacttcctgggt
ctgcgcaacctcacgatcatcgacgacgcgctcaacaacatcgagtccaaccgcggcgag
aagctcgtgctcgaggacctcggcctcgacgaccagggcgcgtacgacctgctcgcccgc
ggcgacaccctcggcgtcttccagctcgacggcgggcccatgcgctcgctgctgcggatg
atgaagcccgacaacttcgaggacatctcggccgtcatcgcgctgtaccggcccggcccc
atgggcgccaactcgcacacgaactacgcgctgcggaagaacgggctgcaggagatcacc
cccatccacccggagctcgaggagccgctgcgcgaggtgctcggcaccacgcacggcctc
atcgtctaccaggagcaggtcatgtcggtcgcgcagaagctcgcgggcttcacgctcgcg
caggccgacctgctccgccgggccatgggcaagaagaagaagtcggagctggacaagcag
ttcgagggcttctcgcagggcatgaaggacaacggctactcgatggccgcggtgaaggcg
ctctgggacatcctgctgccgttctccgactacgcgttcaacaaggcgcactccgcggcg
tacggcgtcgtctcctactggacggcctacctcaaggcgcactacccggccgagtacatg
gccgcgctcctcacgagcgtcggcgactccaaggacaagatggcgctctacctcaacgag
tgccggcgcatgggcatcaaggtgctcccgccggacgtcaacgagtccatcggcttcttc
gcggcagcgggagcggacatccgcttcgggctcggcgccgtgcgcaacgtcggcgcgaac
gtggtcgaggcgctgcgcggcgcgcgcaccgagcagggcgcgttcgagtccttcgacgac
ttcctcaagaaggtcccgctgccggtcgcgaacaagcgcacggtcgagtcgctcatcaag
gccggcgccttcgactcgttgggagacacccggcgggcgctcctcgaggtgcacgagggc
atgatcgacgcctccgtcagcgacaagcgcgcggcgatgaacggccaggtcggcttcgac
ttcgacagcctctgggacgagccgcagcacgcgcgcaaggtacccgagcggccggagtgg
gcgaagcgcgacaagctcgcgttcgagcgggagatgctcggcctctacgtgtccgaccac
ccgctggccggcctcgagatcccgctggcgaagctcgcctcgacgggcatcgccgagctg
ctggcgaccgacgcgtcgatggacggcgagaccgtgacgctcgcggggctcctcacgagt
gtgcagcaccgcacggcgcggaactcgggcaaccagtacggcatggtgcagctcgaggac
ttcggcggcgagatcacctgcatgttcatgggcaaggcgtaccaggagttcgcgccggcc
ctgcagagcgacaccgtcgtggtgatccgcggccgcgtgtccacccgcgacgacggcatg
aacatccacgccttctcgatgttccagcccgacctcgggcagagcctcggctcggggccg
ctgctcatcagcctcgcggagaaccgcgcgacgacggagaccgtcatgggcctcaacgac
gtgctcatccgccactcgggcgacaccgaggtgcggctccagctcgtgaagggcgacacg
gggcgcgtgttcgagatcccgttcccggtcaccgtgagcgcggacctctacggcgagctg
aagtcgctgctcgggccgaactgcctgggctga
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