Clavibacter nebraskensis: CMN_02654
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Entry
CMN_02654 CDS
T02530
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cmc
Clavibacter nebraskensis
Pathway
cmc00040
Pentose and glucuronate interconversions
cmc01100
Metabolic pathways
cmc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cmc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
CMN_02654
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CMN_02654
Enzymes [BR:
cmc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
CMN_02654
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Motif
Pfam:
Beta_helix
Glyco_hydro_28
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
CCE76586
UniProt:
A0AAI8ZK73
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Position
2799803..2800885
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AA seq
360 aa
AA seq
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MRIRLLPAALAGALLLVALTGTGPTAPASAATASGTSATASASADSGSGSAATGAGPTAR
VASVAALRDAIAQHVHHIVITTSLYGGTSPVYVDVLDSASSGTVIEGATPTVELVNIQLR
IFDLTYAGAIHDVTVRDLTMHGRIQDLVALTGAATKPYGVGVNYEAISVRGAAHVTIDHI
VAYDTTDDLMSVTRGADDVTISNSTFSYSRAYADIDPSITWDWGFGLQPLASERLGILVG
ANAKDSYAVTGHLHVNLVDDHIGPLVRGRPLLRGDVDVKGVTFDNTQAGSEQYAAIEVGS
GGRVVVEGCEFDHSNNPIAIHLDSPSDTYALFEGGNTFIATTGTIAKGQPLPPRAGAARS
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatccgcctcctccccgccgcgctcgccggcgcgctcctgctcgtcgcgctgacg
ggcaccggcccgaccgctcccgccagcgccgcgaccgcgagcggcacctccgccaccgcg
agcgcgtccgccgactccggctccggctccgcggccacgggcgccggccccaccgcccgc
gtcgccagcgtcgccgccctgcgcgacgccatcgcgcagcacgtgcaccacatcgtcatc
accacctcgctctacggcggcacctcgcccgtctacgtcgacgtgctcgactcggcatcg
agcggcaccgtcatcgagggcgccaccccgacggtggaactcgtgaacatccagctgcgg
atcttcgacctcacctacgcgggcgccatccacgacgtgacggtgcgcgacctcaccatg
cacggccgcatccaggacctcgtcgcgctcacgggagcggcgacgaagccctacggcgtc
ggcgtcaactacgaggccatcagcgtgcgcggggccgcgcacgtgacgatcgaccacatc
gtcgcctacgacaccaccgacgaccttatgtcggtgacgcgcggggccgacgacgtcacc
atctccaacagcacgttctcgtactcgcgcgcgtacgcggacatcgacccgagcatcacg
tgggactggggcttcggcctgcagccgctcgcgtccgagcgcctcgggatcctcgtgggc
gccaacgcgaaggacagctacgccgtcaccggccacctccacgtgaacctcgtcgacgac
cacatcggcccgctcgtccggggacggccgctgctgcgcggcgacgtggacgtgaagggc
gtgacgttcgacaacacgcaggcaggatccgagcagtacgcggccatcgaggtcggcagc
ggcggccgggtcgtcgtcgagggctgcgagttcgaccactcgaacaaccccatcgcgatc
cacctcgactcaccctcggacacctacgcgctgttcgagggcggcaacaccttcatcgcg
acgacgggcaccatcgccaagggccagccgctcccgccacgggcaggggccgcgcggagc
tga
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