Corynebacterium maris: B841_07690
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Entry
B841_07690 CDS
T02784
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cmd
Corynebacterium maris
Brite
KEGG Orthology (KO) [BR:
cmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmd03019
]
B841_07690
Enzymes [BR:
cmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B841_07690
Messenger RNA biogenesis [BR:
cmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B841_07690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
NACHT
ResIII
AAA_25
T2SSE
PhoH
SLFN-g3_helicase
DUF4562
Motif
Other DBs
NCBI-ProteinID:
AGS35011
UniProt:
S5TJJ0
LinkDB
All DBs
Position
1658651..1662538
Genome browser
AA seq
1295 aa
AA seq
DB search
MPTRDDLYAALDGVTLADERNFRRRLRKARAPKALSEIGAEITAAARRVTRVAEAIPSIT
YPEQLPVSDRRDDIAEAIDNNQVVIVAGETGSGKTTQIPKICLDLGRGRRGLIGHTQPRR
LAARTVAERISEELGQKIGETVGYAIRFDDRVSPSTAVKLMTDGILLAEMQRDRFLNAYD
TIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKVIITSATIDPERFAEHFAAADGSPAPII
EVSGRTYPVEIRYRPLEAEVDGKLIDVDPLDGLCDAIEELMAEGSGDILCFFPGERDIRD
AMEAIEGRRWRGVEVTPLFGRLSNQEQHRVFSPHSGRRIVLATNIAETSLTVPGIHYVVD
TGTARISRYSTRTKVQRLPIEPISQASANQRSGRSGRVADGVAIRLYSEEDFESRPEFTD
PEILRTNLASVILQMISLRLGDIEEFPFVQPPEQRAVRDGLALLHELGAIEPNQERDGAP
VLTAIGRDLSRLPVDPRMARMLVAGNRLGVLDDVTALVAAMTIQDVRERPLEKQAQADQA
HARFKDATSDFLSTLKLWDYINDSRDDLSGNAFRKRMKGEYLHYMRIREWYDLVRQLRGV
SRQLGWSSKDKVVGARDATGIHKSMLTGLLSNIGARDGNSKEFKGARGTRFLVFPGSALA
KKPPEFLMAAELVETSRLWARDVAAIEPAWVEEVAGSLLKHTYSDPVWSRKRAAAMAHQK
STVYGVTVVADRLVPYHRVDPEAARDMFIRHALIEGDWNTHHEFYKRNVARLEEVGELEE
KARRRGLVVDEDTLFDFYDDKLPATVTTARHFDSWWKKEKARNPQLLDFDPEALLAEDAT
QVTGEAFPDTWRTGSLTFDLTYRFEPGHPQDGVTVNVPIPLLAGIDDEGFDWLVPGLREE
LVTELIRSLPKAIRRSVVPAPNFAERALPLLHPFDSPITEQLADALRQLGGSGINVGDFA
VDKLPAHLRMTYAAIDKRGKVVDSDKDLAALKQRQAGQIRSSVSKVGRKAEATAVKNWTP
ENLGEVPEEVSTTVDGHTVAAYPALSATADGVEVKVWPTKAAADASMMTATLTLLMREIT
VNAKQMTKGLPLQQKVAVDNYPHGGADGLVEDARIAAIRDVMIAHGGPVRAPEEFDALKS
KVAPEVPGEVRRAVVGLAPGLVLLSKVKDELAQWSGPAIDDMLAQLEFMLPKNAVTTHGI
GHLRHLPRYLSAMQIRLEEMGLDPDKDADRQDEVGAVKSVLRARLKQLPEARAKSKAVRD
IGWMIQEFRVSLFAQRLGTAHPVSARRIEKAIAKL
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgcccacccgcgacgacctgtacgcggcccttgacggtgtgacgctcgccgacgaacgg
aatttccgccggcggctgcgtaaagcgcgtgcccccaaggcgttgagcgagatcggcgcc
gagatcaccgccgccgcgcggcgggtgacgcgcgtggcggaggcgattccttcgatcacc
tacccggagcaactgccggtcagtgaccgccgcgacgacatcgccgaggccatcgacaac
aaccaggtggtcatcgtcgcaggtgagaccggttcgggaaagacgacgcagatcccgaag
atctgcctggacctgggccggggccggcgcgggctgatcgggcacacgcagccccgccgg
ctggcggcgcgcacggtcgcggagcggatctcggaggagctgggccagaagatcggcgag
accgtcggctacgcgatccgtttcgacgaccgggtgtcgccgtcgacggccgtgaagctg
atgacggacggcatcctgctcgcggagatgcagcgcgaccgcttcctcaacgcctacgac
acgatcatcatcgacgaggcgcacgagcgcagcctgaacatcgactttttgctgggctac
ctcaagcggctgctgccgaggcgcccggacctgaaggtgatcatcacttcggcgacgatt
gacccggagcgtttcgcggagcacttcgccgccgccgacggctcccccgcccccatcatc
gaggtctccggacgcacctaccccgtggagatccgctatcggccgctggaggcggaggtc
gacggcaaactcatcgacgtcgacccgctggacgggctgtgcgacgccatcgaggaactc
atggccgagggctcgggcgacatcctgtgcttcttccccggcgagcgcgacatccgcgac
gccatggaggccatcgagggccggcgctggcgcggggtggaggtcaccccgctgttcggc
cggttgtccaaccaggaacagcaccgggtgttcagcccgcattcgggtcggcgcatcgtg
ctggcgaccaatatcgcggagacctcgttgacggtgccgggcatccactacgtggtggac
accggcacggcacgtatctcgcgctactcgacgcgcacgaaagtgcaacgcctcccgatc
gagccgatttcccaggccagcgcgaaccagcgctcgggccgttccgggcgtgtggccgac
ggcgtggccatccgcctgtactcggaagaagacttcgagtcgcggccggagtttaccgac
ccggaaattctgcgcaccaacctggccagcgtgatcctgcagatgatttcgctgcggctc
ggcgacatcgaggagttcccgttcgtgcagccgccggaacaacgcgcggtgcgcgacggt
ctggccctgttgcacgaactcggcgcgatcgaaccgaaccaggagcgcgacggcgcgccg
gtgttgaccgcgatcggccgggacctctcccgcctgccggtggacccgcggatggcgcgc
atgctggtggcgggaaaccgcctgggcgtgctcgacgacgtcactgcgctggtggccgcc
atgaccatccaggacgtgcgcgagcgccccctggagaagcaggcgcaggcggatcaggcg
cacgctcggttcaaggacgccacctcggattttttgagcaccctgaaactgtgggactac
atcaacgactcccgcgacgatctgtccggcaacgcgtttcgcaaacgcatgaagggtgaa
tacctgcactacatgcgcatccgcgagtggtacgacctggtgcgccagctgcgcggggtc
tcccgccagctgggctggtcgtcgaaggacaaggtcgtgggcgcacgcgacgccaccggc
atccacaagtcgatgctgacgggcctgttgtccaatatcggcgcccgggacggcaactcc
aaggaattcaagggcgcccgcggcacccgctttctcgtcttccccggttccgcgctggcg
aagaagccgccggagttcctcatggccgccgaactggtggagacctcccggctgtgggcg
cgcgacgtcgccgccatcgagcccgcctgggtcgaagaagtcgcggggtcgctgctcaag
cacacttacagcgacccggtgtggtcgcgtaagcgggccgccgcgatggcgcaccaaaaa
tccacggtctacggcgtcaccgtcgtcgccgaccggctggtgccctaccaccgggtggac
ccggaggccgcccgcgacatgttcatccgccacgccctgatcgaaggcgactggaacacc
caccacgagttctacaagcgcaacgtcgcccgcctggaggaagtaggcgaactggaggaa
aaggcgcgccgccgcgggctggtcgtcgacgaggacactctcttcgacttctacgacgac
aagctgcccgccaccgtgaccaccgcccggcacttcgattcctggtggaagaaagaaaag
gcccgcaacccgcagctgctcgacttcgacccggaggcgctgctggccgaagacgccacc
caggtcaccggcgaagccttccccgacacctggcgcaccggatccttgaccttcgatctg
acctaccgcttcgaacccggccacccccaggacggcgtgaccgtcaacgtgccgatcccg
ctgcttgccggcatcgacgacgaaggcttcgactggctggtgcccgggctgcgcgaagaa
ttggtcaccgagctgatccgctcgctgcccaaggccatccgccggtctgtggtgccggcc
ccgaacttcgccgaacgcgccctgcccctgcttcaccccttcgactcccccatcacggaa
cagttggccgacgcgctgcgccaactcggcggcagcggcatcaacgtcggcgacttcgcc
gtcgacaagctgcccgcccacctgcggatgacgtacgcggcgatcgacaagcgcggcaaa
gtcgtcgactccgacaaggatctggccgccctcaagcaacgccaggccgggcagatccgc
tcttcggtgagcaaggtcgggcgcaaagcggaggccacggccgtcaagaactggacgccc
gagaatctgggcgaggtcccggaggaggtcagcaccacggtcgacggccacaccgtcgcc
gcctacccggcgttgtcggccaccgccgacggcgtggaagtcaaggtgtggcccacgaag
gccgccgccgacgcctccatgatgaccgccaccttgacgctgctgatgcgcgagatcacc
gtcaacgccaaacaaatgaccaaggggttgccgctgcagcaaaaagtcgccgtggacaac
tacccgcacggcggtgccgacggcttggtcgaagacgcgcgtatcgccgccatccgcgac
gtgatgatcgctcacggcgggccggtgcgtgccccggaggaattcgacgcactgaagtcg
aaagtcgccccggaggtgcccggtgaagtccgtcgcgccgtggtcggcctggcccccggg
ctggtgctgctgtcgaaagtcaaggacgaattggcgcagtggagcgggccggcgatcgac
gacatgctcgcccaactggagttcatgctgcccaaaaacgccgtgacgacccacgggata
gggcacctgcggcatctgccgcgctacttaagcgcgatgcagatccggctggaggaaatg
ggcctggatccggacaaggacgcggaccggcaagatgaggtcggggcggtcaagagcgtc
ttacgggcgcggttgaagcagctgcccgaggcccgcgcgaagtcgaaggcggtgcgcgac
atcggctggatgatccaggaatttcgggtcagcctcttcgcccagcggctgggcaccgcc
cacccggtctccgcgcggcggatcgaaaaggccatcgccaagctctga
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