Cyanidioschyzon merolae: CYME_CMA072C
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Entry
CYME_CMA072C CDS
T00175
Name
(RefSeq) probable nuclear exosomal RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CMA072C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMA072C
03041 Spliceosome [BR:
cme03041
]
CYME_CMA072C
03009 Ribosome biogenesis [BR:
cme03009
]
CYME_CMA072C
03016 Transfer RNA biogenesis [BR:
cme03016
]
CYME_CMA072C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CYME_CMA072C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CYME_CMA072C
Spliceosome [BR:
cme03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CYME_CMA072C
Complex C
U4/U6.U5 tri-SnRNP related factors
CYME_CMA072C
Ribosome biogenesis [BR:
cme03009
]
Eukaryotic type
Pre-60S particles
Helicases
CYME_CMA072C
Transfer RNA biogenesis [BR:
cme03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CYME_CMA072C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
16992178
NCBI-ProteinID:
XP_005535067
UniProt:
M1UN15
LinkDB
All DBs
Position
1:complement(222535..225675)
Genome browser
AA seq
1046 aa
AA seq
DB search
MRKKVHAKQVLGSEAEQKRSTTATKRREAQHGSNSWVPHRARRDGNRKRFRPAAQHALDP
TGSKVESDPPWIGQSAAELRLKHPLLSGSRPRTLTLETLTETGKTSLSEPSQADAVIDDL
SVLDLSTGSRCACVHTVSIPASLSEYDSSKLSVWPPKGRPPAKEFPFALDLFQIEACKCL
EAGESVMVAAHTSAGKTAIAEYAIALSLREHRRVIYTSPIKALSNQKYREFQSEFNDVGL
ITGDVTLNPNASCLIMTTEILRSMLYRGSDVVREAAWVIFDEVHYMRDRERGVVWEESII
LLPDSVRFVFLSATIPNAEEFAEWIVALHQAPCHTVYTEKRPVPLRHFALSNQEDRLVLL
KDEGGRFYRKNFERIRKDLRIDRFRGPSRGRTLSNAEFRKIIRFAIDQDLQPMIVFSFSR
KDCEALARCISGMDLNGEEEKALVENVYQNAMATLNSQDQQLDQIGTMLEMLKRGVGVHH
SGLFPIVKEIVEILFQEGLVKVLLATETFSLGLNMPARMVFFTALKKFDGRNVRYITSGE
YIQMSGRAGRRGLDERGIVILRLEDDTNEDCLRRILSGRPDELTSAFRLGYNMLLNLQRS
EESRPEQIMVRSFAQFQAVKRAENAVAELENLEAEMKQMHFTHEEEEVEQFYKLNQRLAE
IDRNISRYYRCENVDLFLKNGRLLKLRDDQHWSVVMDPKCCGLPNKTHGFSVFRRKVDGV
WRLQNLQRSLIQLISAVCIEMPETVDTEMSRSIISERVQSAERHYASVGGGLPLLDPIYD
FGIREKSLRALMHERRCLVQEMRKCAASKPELHEDIKLYGLRLQLAPQAEKIQRDLRVRS
HLIHAAELEAMNRVLHALGYLDENKQLSPKGRVCCEISAANELILTECIFEGILRDMPEP
LIPAILSGFVLDEKAKDSQMAVAEDADIREHLQKVQQDIHRVVGRIARVQRDAGLRWEYV
CEEPNWDPNIISAIHAWCKGQPFSEALKLAKVFEGSLIRCMRRVDEVLQQLRNAVDSVGD
AALSAKFAQSSALLHRDIVFAASLYL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaaagtacacgccaagcaggtgctaggctcagaagctgaacagaagcgctca
acgacagcgaccaagcgtcgcgaagcacagcacggctccaactcgtgggtcccgcaccgt
gctcgtcgcgatggaaataggaagcgctttcgtccggctgctcagcatgcattggatcca
accggctcaaaggtcgagtctgatccgccctggattgggcagagcgcggcggagctgcgg
ctcaaacaccctctgctcagtggctcgcggccgaggacgctgacgcttgaaaccctgaca
gaaaccggcaaaacctctctttcagagccttcccaagctgacgctgtgatagatgatctg
agcgtgctcgacctctccacaggtagtcgttgcgcgtgcgtccatactgtgtctattcca
gcgtcactctctgaatatgattcttctaagctgtctgtttggccaccgaaaggacgcccc
ccagcgaaagaattcccgtttgctttagacttgttccagattgaagcttgcaaatgcttg
gaagcgggagaatctgtcatggttgcagcgcatacctcagccggaaagactgccattgca
gaatacgctattgcgctctcgcttcgtgagcatcgtcgggtcatctatacctcgccaatt
aaggctctaagcaaccagaaatatcgagaatttcaaagcgaattcaatgatgttggtctc
attacgggtgatgtgacgctgaacccaaatgcgagctgtttgatcatgaccactgagatt
ttgcgatccatgttgtacaggggctccgatgttgttcgagaggccgcttgggtcatcttc
gacgaagttcattacatgcgcgatcgtgagcgtggcgtcgtctgggaggagagcattatt
ctgcttccagacagtgttcgcttcgtcttcctttcggcaacaattccgaacgccgaagaa
tttgccgaatggattgtggcactccatcaagccccctgtcatacagtttataccgaaaaa
cgacccgtgccgcttcgccatttcgcgctttccaatcaggaagaccgactcgttttgtta
aaagacgagggcggcagattctatcgcaaaaatttcgaacgaatccggaaggatttaagg
attgatcgatttcgcggaccgagcagaggccgcaccctctcgaatgcggagtttcggaaa
atcattcggtttgcaatcgatcaggacttgcagccaatgattgttttctcgttcagccgc
aaggattgtgaagctctggcgcgctgcatctctggaatggacctgaatggcgaggaagag
aaagcactcgtcgaaaacgtctaccagaatgcaatggcgacgttgaactcgcaagaccaa
cagctggaccagatcggcacgatgctcgaaatgctgaaacgaggcgttggtgttcatcat
tcaggtttgtttcccattgttaaggaaatcgtcgagattctgtttcaggagggtctcgtg
aaagttctgttggctacagaaacattttccctgggactgaacatgcctgcgcggatggtt
ttcttcactgcgttgaaaaagttcgacgggcgcaatgtgcggtacatcacgagtggcgag
tacatccaaatgtccggccgtgctgggcgcagaggtctggatgagcggggcattgtgatt
ctgagactggaagatgacaccaacgaggattgcctgcgtcgaatcctctctggtcgtccg
gacgagttgaccagcgctttccgccttggctacaatatgctactgaatttacaacggtca
gaggagtctcgtccggagcaaattatggtccggtccttcgcccaatttcaggcagtgaaa
cgggcggaaaacgcggttgcggaattggaaaacctagaggccgaaatgaagcaaatgcac
tttacacacgaagaagaagaggtggagcaattctacaaattgaatcagagattagctgaa
atagaccggaacatatcacgctactaccggtgcgagaatgttgacttatttttgaagaat
ggtcggcttctgaaactacgggatgaccagcactggtccgtcgttatggatccaaaatgc
tgcggccttccgaataagacacacggattttccgtattccgaagaaaagtcgacggtgta
tggcgtctacaaaacttgcaacgctcactgatccagttgatatcggcggtttgcatcgaa
atgcccgaaacagtcgatacagaaatgagtcgctccatcatcagcgaacgcgtgcagtcg
gcagagcgccattacgcctcggttggcggcggcttgccgctcttggacccgatttacgac
tttggcattcgggaaaaaagtttgcgtgcgttgatgcacgaacgccgatgcttagtgcag
gaaatgcgcaagtgcgctgcatcgaaacccgagttacatgaggatatcaaactctatggg
ctgcgtctccaacttgctccacaagcggagaaaatccagagggacttacgtgtcagaagt
catcttattcatgctgccgagctcgaagcgatgaatcgggttcttcacgcgctcggttac
ctcgacgaaaacaaacagctctctcccaagggccgcgtatgctgcgagatcagcgcagca
aacgaactcatcttgactgaatgcatcttcgaaggcatcctcagggacatgccagagccc
ctgataccggccattctgagcggttttgtgctggatgagaaagccaaagacagccaaatg
gctgtagcagaagatgcggatatcagagaacatttgcaaaaggtacagcaggatattcac
cgcgtcgtgggccgtattgcccgagtccaaagagacgccggtctgcgatgggaatacgtt
tgtgaggaaccaaactgggaccccaacatcatttccgctattcatgcgtggtgcaaaggc
cagccattctctgaagccttgaaacttgcgaaagtttttgagggaagtctcatacgctgc
atgcgccgggtcgatgaggtcctccagcagcttcgtaacgcggttgattcagtaggcgac
gcagctctgagtgccaagtttgcccagagcagtgcactacttcatcgagatatagttttc
gctgcgtctctatacttgtaa
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