Cyanidioschyzon merolae: CYME_CMC123C
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Entry
CYME_CMC123C CDS
T00175
Name
(RefSeq) probable replication protein A
KO
K07466
replication factor A1
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03030
DNA replication
cme03420
Nucleotide excision repair
cme03430
Mismatch repair
cme03440
Homologous recombination
cme03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CYME_CMC123C
03420 Nucleotide excision repair
CYME_CMC123C
03430 Mismatch repair
CYME_CMC123C
03440 Homologous recombination
CYME_CMC123C
03460 Fanconi anemia pathway
CYME_CMC123C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cme03000
]
CYME_CMC123C
03032 DNA replication proteins [BR:
cme03032
]
CYME_CMC123C
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMC123C
Transcription factors [BR:
cme03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
CYME_CMC123C
DNA replication proteins [BR:
cme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
CYME_CMC123C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
CYME_CMC123C
MMR (mismatch excision repair)
CYME_CMC123C
DSBR (double strand breaks repair)
HR (homologous recombination)
CYME_CMC123C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
Zn_ribbon_6
BRCA-2_OB1
DZR
DUF5817
Motif
Other DBs
NCBI-GeneID:
16992528
NCBI-ProteinID:
XP_005535335
UniProt:
M1V6L6
LinkDB
All DBs
Position
3:complement(287021..289012)
Genome browser
AA seq
663 aa
AA seq
DB search
MASTALSRGAVKSIYGMNTVSRPVLQVQEVRKLQPSVAQQAQATTSGDRYRVVLSDGEHL
LHCVLMAQLNSFVLSGDLDKGSIVRLVDYQPNKVQDRVVAIIINLEILERNAPTVGNPKA
FDPRASTDTALSSHSFDDDSTETARKRQAVSAGVEHKPPPPRVTPGAPPVSVPPPVKSAA
AGPVVRFDQGLGSSVETLAPPGGYTKISAANPYQNNVIIRGRVVQKGELRTYSNAKGEGK
LFSFEIADETGNMRVTAFREKALEAHQRIELNGIYSIAGASLKPANAQFNHTGHSFEMIL
DQNSVITQLPDDNMIQRVSFDFVKIRDLMDVPVGKVVDVIGIALDIGEVGEISSKTTGLP
VAKREVKLIDDTGCSVALTIWGERARSLFSNEDDRPVLLVKSAKRGDFNGVSLSTTPSSH
VEVNPNIREAFELRGWFDSEGHGAEFQDLGGTPLGGARTESRIRNSERKTFAQVQSEHIG
EDPHSAPGASYYTVRATISHIKQDEERPPWYLSCPDCKKKVIEESPDMYRCERCDKLVKP
TPRYIFSIQAMDATGSHWLNCYDEVGPIIFGGYSAEELKRIKETDSEEYQRILEQAHFGE
FLFRVRVRSDTYQDEMTFRHMVVGAEKINYESEMKMLESEIHNYDQAGQRLTKPFQETIS
ALH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacagcactcagtcgtggtgcagtgaaaagcatttatggcatgaacaccgtg
tcgcggcctgtgcttcaggtacaggaggtaaggaagctacagcccagtgtagcgcagcag
gcacaggctacaaccagcggtgatcgttatcgagtggttctatcggatggcgagcacttg
ctacactgcgtgctcatggcccaactgaactcgttcgttttgagtggggatctcgataaa
ggatcaatcgttcggttggtcgactatcaaccgaacaaagttcaagaccgagttgttgcc
attatcatcaacctggagattttggagcgaaatgcgcccactgttggcaacccgaaagcg
tttgatcccagggcgagcacggataccgcattaagctcgcatagctttgatgatgattca
acggaaacggcaagaaaaaggcaggcggtctcagccggtgtcgaacataagcctccaccg
ccgcgggtaacacccggcgcgcctccagtgtccgtaccgccacctgttaaatctgcagct
gctggccccgtagtgcggtttgaccaaggtctgggatcatcagtggaaactctagcaccg
ccgggtggctacacaaagatcagcgccgccaacccgtatcagaacaacgtgatcataagg
ggtcgcgtggtgcagaagggagaactgcgtacgtattcgaacgccaaaggcgaagggaaa
ctcttttctttcgaaatagccgacgaaacagggaatatgcgcgttacggcgtttcgtgaa
aaggccctcgaggcacatcaacgcattgagctgaacgggatttacagtattgcaggtgcg
agcttgaaaccagcaaacgctcagttcaatcatacgggtcattcttttgagatgatcttg
gaccagaactcggtcatcacccagcttccggatgataatatgattcaacgcgtctcgttc
gactttgtcaagatacgtgatctaatggatgttcctgtcgggaaagtggttgatgtcatt
ggcatcgctttggacatcggtgaagttggagaaatcagctccaagacgacaggcctgccg
gttgcaaaacgggaagtcaaactgattgatgatactggatgcagtgttgcgttaacgatt
tggggtgagcgagctcgttctctcttttccaatgaagatgaccgtcccgtgttgctcgtc
aaatccgcaaaacgcggtgatttcaatggcgtcagcctcagtacaacacccagctctcac
gtcgaggtgaatcctaacatccgtgaggccttcgagctgcggggctggttcgattcggaa
gggcatggcgctgagtttcaggatcttggcggcacaccgcttggtggagcacgaacagag
agtcgtatccgaaacagtgaacgcaaaaccttcgcccaagtgcagagcgagcacatcggt
gaggatcctcactctgcacccggtgcgtcatactacacggttcgcgctactataagccac
atcaaacaggatgaagaacgcccaccatggtatctgagctgtccagactgcaagaaaaaa
gttattgaagagtctccagatatgtatcgatgtgagcgctgcgataagctcgtgaaacct
accccccgctatatattcagcattcaagcaatggacgctaccggaagccactggcttaac
tgttacgacgaagtaggtcctatcattttcggaggctacagcgcagaggaactgaaaaga
atcaaagaaacagattctgaggagtaccagagaatcctggaacaagcacattttggtgag
tttctgtttcgtgttcgcgtccgcagcgatacctaccaagatgagatgacgttccgtcac
atggttgtcggggcggagaagatcaattacgagtctgaaatgaaaatgcttgaatcagaa
atacataattatgaccaggctggtcaacggctcacgaaaccattccaagaaaccatttct
gcgctgcactag
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