Cyanidioschyzon merolae: CYME_CMD129C
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Entry
CYME_CMD129C CDS
T00175
Name
(RefSeq) similar to BRCA1-binding helicase-like protein BACH1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03440
Homologous recombination
cme03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CYME_CMD129C
03460 Fanconi anemia pathway
CYME_CMD129C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMD129C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CYME_CMD129C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
CYME_CMD129C
FA (Fanconi anemia) pathway
Downstream FA components
CYME_CMD129C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
16992678
NCBI-ProteinID:
XP_005535484
UniProt:
M1VF97
LinkDB
All DBs
Position
4:333153..336464
Genome browser
AA seq
1103 aa
AA seq
DB search
MSNVERHEEPNGAQTLKTWRTLEIAGLEVKFPTELEPHKPQLIIMNQVIRCLQRAQNACI
ESPTGTGKSLALLCSALAWLEKEKERSEPSLLAVANHADMHSEFKPETEEPADEKQSIPK
LLPESRSAADDCGVQDVDDDDDDDDFTSRPAPRVSQLKSASQRWRQQGAVAGTRHRYPLC
GKQVPLNPLCSVAVHLEGTNLAVQQRHPRIFFCSRTHAQLSQVIAEMRRTPYAGKMRSTL
LASRKHYCVHEDIQRAPSTLQAEACQRAVQLSFMEEAKSAADASSTVADPLAGISPCFYH
HSAAVRRTACSAPQPFQMEDLVQVGRHWHGCPYFASRFLVHGDIQTEPNQDSVEGSSVPD
ERSHTGSASSTDGAVSARATSCTTRTRTIIEPADIIFSPYSYLVDPLIRRRMDIDITGAV
LIIDEAHNIEEVCLEAASVDVSLSQVQRVLLQLDHYLGVQMPETEPTLETLMVRRPSLNG
TALLRVFRHWLQALASFIETRIPLLDDIHGIPESHRPTSGPCTAAQRLHAQATVFWQDGA
LLHELEVGFFQNFDFEQWNWSMGQLNRFLDRWRQKQQRTVPALASGMAASTGFGTETATE
EHAEQSVQARPTTGDERAETEPRFASLCGEVLHLLERFHIALQFIYGGQSSKGAAAPAEA
SLLHATDYRLVLRREMRQGTYGGVEFKLGLWCMNPAIAFRHLRDNARSIVLTSGTLSPME
SFRSELATDFLCQTECDHIIDPEKHVRVCVVGTSSSGDRLEGSYRTSATWSYQDAIGEAL
AHCSAQIPDGVLCFMPCYRVLESMLQRWSSTGAIERICGAKRLFIERSSGQVITEYATET
AGGYRLQRRGWRDSCFTPAREYGTDASVAALGERPSSLRAASSSILSRDRSKRKRRGAGR
AYTSASAYANRDALQVYYDAVDAARTETTASAPVPAANARCRITADHKNGAIMLAVCRGK
ISEGLNFADQYGRAVIMVGIPYPNLTDTFVQLKMRYNDERSGAVSGAPINATSTSRLSGK
QWYVLQAHRTVNQALGRCIRNPKDYASIILLDVRYRDTRTVNCMCRWIRDPLRDYIARHG
QTLTLEAAVREVAEFFFQKYDAK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatgtcgagcggcacgaggagccaaacggagcgcagacgctgaagacctggcga
acgctggagatcgccgggctggaggtaaagttccccacagaattggaaccgcacaagccg
cagttgatcattatgaaccaagtgataagatgtttgcagcgggcgcaaaacgcgtgcata
gaatcacctacgggaacgggcaagtcgttggcgttactctgttcggcgctggcgtggctc
gaaaaagagaaagagcgctcagagcccagtctattagcggttgcaaatcacgctgatatg
cactccgaatttaaacccgaaactgaagaacccgccgacgagaagcaatcaatcccgaaa
ttgctgcctgagagccgctctgcggcggatgactgcggcgttcaagatgtcgacgacgac
gacgatgatgatgactttaccagccgaccggctccgcgagtatcgcagttgaaaagcgct
tcacagagatggcgtcagcaaggtgctgtggctggtacgcggcatcgatatccactttgt
ggaaagcaggtcccactgaacccgctctgcagtgtcgcagtgcacctggagggtacgaac
cttgccgtacagcagaggcacccacggattttcttctgttcgcgtacgcacgctcaactc
tcccaggtcatcgcagagatgcgccgcactccatacgctggtaagatgcgttccacactg
ctggcgtcgcggaagcactactgcgtacatgaggatattcagagagcgccatcgactctg
caagcggaagcttgtcagcgagccgtccagctcagcttcatggaggaggccaagtctgca
gctgatgcatccagcacagtagctgaccctctggcaggaatatcgccctgcttctatcat
cacagcgccgcggtgaggcgaacagcgtgttcggccccgcagccttttcaaatggaagat
ctcgtgcaagtcggtcgccactggcatggttgtccgtattttgcatctcgctttctcgtc
catggtgacattcaaacggaaccaaatcaagactctgttgaaggatcaagcgtccccgac
gaacgctcgcacacgggaagcgcttcgtctacggatggtgccgtaagcgcccgggcgact
tcatgtacaacgcggacacgaacgatcatagagcctgctgatatcatcttttctccatat
tcataccttgtggatccgctcattcgtcgacgcatggatatcgatatcaccggtgccgta
ttgataatcgacgaagctcacaacatagaagaggtgtgcttagaagcggcatcagtagac
gtaagtctatcacaggtgcaacgggttctcctgcagctagatcactatctgggggttcag
atgccggaaacagagcccaccctggagacactgatggtccggcgtccgtcgttgaatggt
acggcgttacttcgagtgttccgccactggttgcaggccctagcgtccttcattgagaca
cgaataccgctgttagatgacattcacggcattcccgaaagtcatcgtccgacgtctggc
ccatgcactgcagcgcaacgtcttcatgcacaggccacggttttctggcaagacggtgct
ctcttgcatgagttagaggtagggtttttccaaaattttgactttgagcagtggaactgg
tccatgggccagttaaaccgttttcttgatcgctggcgtcagaaacagcagcgcacggtg
ccggctttggcttcaggaatggcggcctcgacgggctttggaacggaaacagcgaccgaa
gaacatgctgaacagtcggtgcaggcgcgtcccacgacgggcgatgagcgtgcagaaacc
gagccccgcttcgcgtctctgtgcggtgaagtgctccatctgctagaacgcttccacatt
gcgctgcagtttatttacggcggacagagctcgaagggcgcagctgcacctgcggaggct
tccctgctgcacgccacagactatagacttgtactgagacgcgagatgcgccagggcacc
tacggaggagttgaattcaaacttggactttggtgcatgaatcccgcaattgcttttcgt
catctgcgagacaatgcgcgatccatcgtgcttacttcgggaacactatcgccaatggaa
tcttttcgaagtgaacttgcgaccgattttctgtgtcagacagaatgcgaccacattatc
gatccagagaaacacgttcgagtttgcgttgtgggaaccagcagctccggcgaccgtcta
gagggttcctaccgaacgagcgctacctggtcatatcaggatgccatcggcgaagcgctt
gcgcactgcagcgcacagattcccgatggtgtgctctgtttcatgccctgctatcgagtc
ttggagtctatgttgcagcgctggagcagcaccggcgcgatcgagcggatttgtggtgct
aagcgtctcttcatcgagcgctcttctggacaagttataacagaatatgcgaccgagact
gctggcggatacagacttcagcgtcgtggttggcgcgactcctgctttacccctgcaagg
gaatatgggacggatgcatctgtggcggctctcggggaacggccgagctcattacgtgct
gcgtcttccagtatcctgtctcgggaccggtccaagcggaaacgacgcggtgctggtcga
gcgtacacctccgcgtcagcgtatgcaaaccgcgatgctttgcaggtctactacgatgcg
gtggatgcagcgcggactgagaccactgcgagcgcaccggtaccagctgccaacgcgcgc
tgtcgaataaccgctgatcacaaaaacggggccattatgctggctgtttgccggggcaag
atcagcgaaggattgaactttgccgatcagtacggtcgcgcagtcattatggtcggtatt
ccgtaccccaatctgacggacacgtttgtccagctgaagatgcgctacaatgacgagcgc
agcggtgcagtttctggtgctcccatcaatgctacgagcacgagtcgtctgagtggcaaa
caatggtatgttctacaagcgcatcgtaccgtgaaccaagctctgggaaggtgcattcgc
aaccctaaggactatgcgtcgatcattcttctcgatgttcgctatcgcgatacgcgaaca
gtgaactgcatgtgtcggtggatcagggacccgctccgcgattatattgccaggcacggc
cagacgctcaccctagaggcagcagtccgtgaagtagcagaatttttcttccagaaatat
gacgcgaaatag
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