Cyanidioschyzon merolae: CYME_CMD151C
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Entry
CYME_CMD151C CDS
T00175
Name
(RefSeq) similar to transcription initiation protein SPT5
KO
K15172
transcription elongation factor SPT5
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CYME_CMD151C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMD151C
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMD151C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CYME_CMD151C
RNA polymerase I system
CYME_CMD151C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
CYME_CMD151C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW5_SPT5
KOW
KOW1_SPT5
KOW2_Spt5
KOW4_SPT5
Spt5_N
Motif
Other DBs
NCBI-GeneID:
16992699
NCBI-ProteinID:
XP_005535499
UniProt:
M1VFB1
LinkDB
All DBs
Position
4:395206..400407
Genome browser
AA seq
1733 aa
AA seq
DB search
MSKQEKSSETRSADDKSPTAATGNSMTPSAGTADTETPLVSSSQVTDQGSGSVSSRMRDE
ATLSSTGNDSANASVQPASDASDSLQQVSASSMPNVTGSNDDKNPAHVQQTTSGAGQMSS
GLEGCNTSGSAAGSSALPPPPDSPVPVEEAASQVLSAGQAVPESGKRTQASEVQSTATLS
AGRARGVKRGLESAEPDTKSTVEEEPPVKTLRHDAHERYEIHRDQESSTKAADESSSPSS
RLEIPNAPVPAATGVPPVLPGGTSGEDVPAFTPSKPSQASPPLSTPQPATAAGSSETLRP
EDSTESGYSTRDTTERHPLRRQEEALARAPRQNVKSTIQHRMQEEAEGNDGDEYPSAEIK
DGIDDEDDEEERADDDDDDADEEADEDEDEDEDDEEDEDEEEHSSRRRRGAAQFLELEAE
VDEGDEEEEEDDDIQDLVADEDEESADEEELAAEEREAIARREQRRRAEAALLQRAQTAE
ELEKFVQERYGGLDDEDEESDLITRAFLEGAAGAADGSTARRRHGAASDLDVLPVPAAMA
RGKPPTDIEQQSLLPTVHDPRLFLVKCRTGKEKEMTICLLQKCVDRANQGQPLAITGIVA
PDHLRGCLYIEAPRENDVRDAIKGLHHLYQTKITLVPLKEMVEVVSVRPTTERQKLIPGQ
WVRLRRGLYAGDLAQVYQIREDQVIVRLVPRLDLTALARKPRYGAVDAVDRDDMENVDDA
ATKGAPSRQVGEAAAARRGGSRTSGVRPPRKLFDRDQVARILHVNVFARRDSRTGEWFDE
FENDQFRYGLLYKRVSRKNIIHGAAMTPPSIDELEPFQEAERQAQVAAAAAAAAADDDND
NDSDDDDNDDAGAGISDKASDDSLAAAATVQRFTSGIDAIASGTSTPAADMEAFRASSAL
VAATQAVTATAADANRHRFRKGDRVRVRRGDLRNLIGIVDSVLPDARVLIQPTPATGEHD
ASTTPASVQVLAADLEKYFAIGDHVRISAGKHAGLTGLVVATAYQDQDTDKSTDNADNDN
DAQASVTVLADVTNEVVRVSAHLLSESSGEQSAATAAKLIAGGLYHLFDLVTLHSEPRHA
WLILRSLLGHASSTDLMANGANGTMLSARGAVALAQAAVERVQVMNEVGEIKTVSVQDIR
GRRDGSTARTSQLRTLDAAQQPVGAGDAVRIVGARHPHRNREALVMYVFGNRLFLRIREH
LDNAGMVVASGSEVQRLTQAPAAEVNASGAGTVSTSLPFVAPTSGWRPSMGTAFGRGGIG
SGGLGNSTAPLSSSRAPFGGSDSGRKPTPGAVRGGGRGGGGGDPLLHRWVAVTRGPHKGL
SGRVLDASDTSVRLELESSMKTITVARDAVRLRAEASSAATSAALGRASVIGGLYGPGLV
TGLAGQSAYGLGMATGAYGQASLVTGTPGATSSLAAVGAGVASARTPLQGWQPNNQVAGM
QRTPAMDASYATVPVTPYASALTATPLHPSVPMTPAHEFGGTAAGGASARGGGASDVWRP
MTPAHVPEAFASVRPSTPMHPAVDAQRPTSVKAAVDDGASEAGAGAGAGAGAGAGAGAGA
AAAGPGPVAMSSECNPATPDTPDAVTPAPPTTTTIRKVPESVPGAFTVSSVPSYWLGAVM
RDKRAGNRLVVVCGLPSEESGSWLVKAYDQQQDAASKHTEQEASKAEARARTELEPVAPD
PGDTLVVYQGDLEGVLGVCIHVDEDGDCMFKEHGTQELRVVGVNQAIRRISTA
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcaggaaaaatccagcgaaactagaagcgcagatgacaagtcgccaacggca
gcgactgggaactccatgacaccaagcgctgggacagcagacacggaaacacctctagta
agctcttcacaggttacggaccaagggagcggttctgtttcaagtcggatgcgggatgaa
gcgacgttgtcctcaaccggaaacgactcggcgaacgcaagcgtgcaacccgcgagcgac
gcctcggactcgttgcagcaagtctcggccagctcgatgcccaacgtcacaggatccaac
gacgacaagaacccagcacatgtacaacaaacaacttctggcgctggtcagatgtcgagc
gggctggaaggatgcaacacttctggctcagcagcaggttcgagtgcgctcccgccacca
ccagattcaccggttcctgtcgaagaggcggcatcacaggtgctatccgcaggacaagca
gtgcccgagtcgggcaaacgaacccaggcgtctgaagtccagtcaacagccacattgtca
gcaggtcgtgctcgcggagtcaaaagaggactcgaatctgcggagccagacacgaagagc
acggttgaagaggaacctccggtgaagacccttcgccatgatgctcacgaaagatacgaa
attcatcgtgatcaagaatcctctacaaaagcggcagatgagtcttcatcgccatcgtcc
agattggagataccgaatgctccagtgccggctgcgacgggcgtaccacctgttctacca
ggcggtaccagcggtgaagatgtgcctgcttttacaccaagcaaaccatcccaagcgtcc
ccgccgctgtcgacaccgcaaccggctacggcggcagggagcagtgagacattgagacca
gaggactcgacagagtcggggtattcgacgcgcgataccaccgaaagacatccgctgcgg
cggcaggaggaagcgcttgcgagagcgccgcgccagaacgtcaagagcacgattcaacat
cgtatgcaggaagaagcggaaggaaacgacggtgatgaatacccaagcgcggaaatcaag
gacgggatcgatgatgaagacgatgaagaagaaagggcagacgacgacgatgacgatgcg
gatgaggaagccgatgaagacgaagacgaagacgaagatgacgaggaagacgaagatgaa
gaggagcacagcagccgccgaagacgtggagcggctcagttcttggaactcgaggccgaa
gtcgatgaaggcgacgaggaagaagaggaagatgatgatatccaagacctcgtcgccgat
gaagacgaagaatccgcagatgaagaggagctcgctgccgaggagcgggaggccatcgct
cgccgcgaacaacgtcgtcgagcggaggcagcgcttctgcaacgcgcccaaaccgctgag
gagctcgaaaaattcgtccaagaacgttacggtggcctcgacgatgaagacgaggagtcc
gacctcatcacccgggcgtttcttgagggtgcagctggtgctgctgatggatcaacagca
cgccgtcggcacggtgccgcatccgacctggacgtgttgccggtgccggctgccatggct
cgcggcaagcccccgaccgacatcgagcaacagagcctcctgccaacagtgcatgacccg
cgcttgttcctggtgaaatgtcgaactggtaaggaaaaagaaatgaccatctgtctcttg
cagaaatgcgttgaccgggcgaatcagggtcaacctctggcgatcaccggcatcgtggca
ccggatcatctgcgcggttgcctctacattgaggcaccacgtgaaaacgatgtccgagac
gccatcaaaggactccatcatctgtaccagaccaagattacgctggtcccgttgaaagag
atggtagaggtcgtctctgtacgacccacaacggagcgtcagaagctcattccaggccaa
tgggtgcgtctacgtcgtggcctctacgctggggatctggcacaagtctatcaaattcga
gaagatcaagttatcgttcgcttggtaccgcgtctggacttgacggcgttggcgcggaaa
ccgcgctacggtgccgtcgatgccgtcgaccgagacgatatggaaaacgtggacgatgcc
gctacaaaaggtgctccttcacgtcaagtcggagaagctgccgcagcacgccgcggtgga
tcgcggacgtccggcgtgcgtccaccgcggaaactctttgatcgagaccaggtcgctcgt
atccttcacgtgaatgtgtttgcgagacgtgattcgcgcaccggtgagtggtttgacgag
ttcgaaaacgatcagtttcgttacggtcttttatacaaacgcgtctctcgaaagaatatc
attcatggagcagcgatgacgccgcccagcatcgacgagctggagccgttccaggaagcg
gagcgtcaggcgcaagttgctgctgccgccgccgccgccgccgctgatgatgataatgat
aatgatagtgatgatgatgataatgatgatgctggtgctggtatcagcgataaagcgtct
gacgactcgcttgccgcagcggcgacggtgcagcggttcaccagtggtatcgacgccata
gcaagcggtaccagtacacctgcagcggacatggaagcgtttcgcgcttcatctgctctg
gtggctgcaacacaagcggtcaccgctaccgctgcggatgccaatcgtcatcgttttcgc
aaaggggatcgtgtacgcgttcgacgcggtgacctgcggaacctcatcggcatcgtggat
agcgtcctgcccgacgctcgagtcctcatacaaccgaccccagcgacaggtgagcacgat
gcctcgacgacaccggcgtcagttcaggtgttggcggcagacctggaaaagtactttgcc
atcggggatcatgtgcggatatccgctggcaaacatgccggtctcactggcctcgttgtg
gctaccgcgtaccaggaccaggacactgacaagagcaccgacaacgccgacaacgacaat
gatgcacaagcgtcggtaaccgtgctcgccgatgtaacaaacgaggtcgtacgcgtctcc
gcgcacctgctcagcgagtccagtggagagcagagcgctgctacagccgccaagttgatt
gccggtggcctgtaccatctcttcgatctggtgacactgcactcggagccgcggcatgcc
tggttgatcctgcgtagcctgctggggcacgcctcatctaccgacctgatggcgaacggt
gcaaacggcacgatgctgagcgcacgcggtgctgtagcacttgcacaggccgctgtagaa
cgcgttcaggtgatgaacgaagtcggagaaatcaagacggtcagtgttcaggatattcgc
ggacgtcgcgatgggagcacggctcgcactagccagctgcgtaccctggatgccgcccag
caaccggttggagctggtgatgcagttcgcatcgtcggtgcccgacatccgcaccgtaac
cgcgaagcgcttgtgatgtatgtgtttgggaatcgcctttttctgcgtattcgtgagcat
ctcgataacgcaggtatggtggttgcaagcggcagcgaagtgcagcggctgacacaggcg
cctgcagccgaggtgaacgcttcgggagccggcaccgtgtcgacgtcgttgccgttcgtt
gcaccgacaagtggttggcgtccatcgatgggcactgcgtttggacgcggtggtatcggg
agcggggggctcggtaacagcaccgcgcccttatcatcgtcgagagcaccgtttgggggt
agtgattcgggccggaagccgacgcctggtgcagtacgcggtggtggtcgtggtggtggt
ggtggtgatccgcttctgcaccgctgggtagcggtgacgcggggtccgcacaagggcctc
tccggacgcgttctagatgcttcggatacgagtgtgcgcctggaactggagtcatcgatg
aagacgattacggtggcacgggatgcggtacgcctacgtgcagaggccagttcagcagcg
acgagtgctgctctgggacgtgcatcggtcatcgggggtctctatggccccggactcgta
acagggcttgcgggacagagcgcttacggactcggtatggctactggtgcctatggacaa
gcgtctttggtgacgggcacgcctggtgcgacctcatcgctggccgctgttggtgcaggc
gttgcctccgcgaggaccccgttgcagggttggcaacctaacaaccaggttgccgggatg
cagcgtaccccagcgatggatgcttcgtatgcgacggtacccgtgacgccgtacgcttcg
gcactgacggcaacgccactacatccctcggttcctatgacaccggctcacgagttcgga
ggtacggcagcgggtggcgcttctgctcgtggtggtggtgccagcgatgtctggcgtccg
atgacaccggcacacgttcctgaggcgtttgccagtgtacggccgtcgacgcccatgcat
cccgcggtggacgcgcagcggccaacgagcgtcaaggctgcagtagacgacggcgccagt
gaagcaggagcaggagcaggagcaggagcaggagcaggagcaggagcaggagctggagca
gctgccgcgggccccggcccagtcgcaatgtcgtcggaatgcaacccggcgacaccagac
acaccagacgcagtcacaccagcgccaccaacgacaacgacaatacgaaaagtaccagaa
tcagtgccgggcgcgtttacagtatcttcggtgccatcctactggcttggggcggtcatg
cgtgacaagcgtgcgggcaatcgtctcgtggttgtttgcggtttaccgtccgaagaatcc
ggatcatggctggtcaaagcgtatgatcaacaacaagacgccgcatcgaagcacactgaa
caggaggcatccaaggcagaggcacgcgctcgaaccgagctcgaaccggtagcgcccgat
cccggcgataccctcgttgtgtaccagggagacctcgagggtgtccttggtgtctgcatc
cacgtggacgaggacggtgactgcatgttcaaggaacacggtacgcaagagctgcgtgtc
gttggcgtgaaccaggcaatccgacgcatctccacagcctaa
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