Cyanidioschyzon merolae: CYME_CME073C
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Entry
CYME_CME073C CDS
T00175
Name
(RefSeq) ATP-dependent RNA helicase P47
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03013
Nucleocytoplasmic transport
cme03015
mRNA surveillance pathway
cme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CYME_CME073C
09122 Translation
03013 Nucleocytoplasmic transport
CYME_CME073C
03015 mRNA surveillance pathway
CYME_CME073C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CME073C
03041 Spliceosome [BR:
cme03041
]
CYME_CME073C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYME_CME073C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CYME_CME073C
Spliceosome [BR:
cme03041
]
Complex C
Other components
EJC/TREX
CYME_CME073C
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CYME_CME073C
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrD-helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
16992761
NCBI-ProteinID:
XP_005535587
UniProt:
M1UPG6
LinkDB
All DBs
Position
5:207247..208614
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AA seq
455 aa
AA seq
DB search
MPAKANTSVASHAEVPPEEELVDYEEDQEENALAEETNDAAADQVADAESTEGQQAEPQL
AKGTYASLHSANFRDFLLRSELLRAIEDCGFESASEVQVQALPQAVLGTDVLVQAKSGLG
KTAVFVLAILQQLEPEKSENSVSAVILAHTRELAYQIKNEFVRFSKYLPDVRCGVFYGGE
PIKQQLEQLASSVPHIVVGTPGRLLDLAVKRKALDLSKVRFFVIDECDKVLEMLDMRADV
QEIFKMTPRNKQVMMFSATLPPETRSIARKFMHNPHEIFIDDESKLTLHGLLQYYLKLEE
TEKNRKLNDLLDALEFNQLVIFVRSVQRAKFINQMLKESNFPSITIHSAMPQEERIKRYR
AFKDFEARILVSTDLFGRGVDVERVNVVINYDMPADSDQYLHRVGRAGRFGTKGLAISFI
SSEEDSAVLEAVQNRFVVNIPELPESIDPSAYMTA
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaaaagcgaatacttccgtagcgagtcacgcggaggtgccaccagaggaagaa
ctcgtagactacgaggaggatcaggaagagaacgcgttggctgaggaaaccaacgatgcc
gccgcggatcaggttgctgacgcagagtctacggagggtcagcaggcggagccacagttg
gcgaaaggcacttatgcttccttgcactcggccaactttagagactttcttctgagatcg
gagctcttgcgtgcaatagaagactgtgggttcgagtctgcgtctgaggtgcaagtgcaa
gcgctgccacaggctgttctaggaacggatgtacttgtccaagccaagtctgggctgggg
aagactgctgtcttcgttctcgcaattttgcaacagctcgaaccggaaaagtcagagaac
agtgtgagcgcagttattttagcacacaccagagagttagcttaccagatcaaaaacgag
tttgttcgcttcagcaagtacttgccagacgttcgctgtggcgtgttctacgggggcgaa
ccgatcaaacaacaacttgagcagctggcaagctcggttccacacattgtcgtgggcact
ccaggtcgccttctggatttggctgtgaaaaggaaggcgctggacctgagcaaggttcgg
ttttttgtcattgacgagtgcgacaaagtactcgaaatgcttgacatgcgcgcagatgtg
caggagatattcaagatgacaccgcggaacaaacaggtaatgatgtttagtgcgacgttg
ccaccagagacgcgaagcatcgcgcgcaaattcatgcacaatccgcacgagatctttata
gacgacgagagcaagttgactttacacggcctgttgcagtactatctgaagttagaggaa
acagagaaaaaccggaagttgaatgatctcctggacgctctggaattcaatcagctggtt
atattcgtacgttctgttcagagggccaaatttatcaaccaaatgttgaaggagagcaat
ttcccttccattacgattcactctgcaatgcctcaagaggagcgcataaagcgctatcga
gcgttcaaagactttgaggcgcggattctggtgagcacggatctcttcgggcgcggcgtc
gatgttgaaagagtcaatgttgttattaattatgatatgccagcggacagcgatcagtac
cttcaccgcgttgggcgtgcgggtcgatttgggaccaaggggctggctatcagttttatt
tccagcgaagaggacagcgctgttctcgaagcagtgcaaaatcgttttgtggtcaacata
cctgaattgcccgagagcatcgatccctccgcgtatatgacggcgtaa
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