Cyanidioschyzon merolae: CYME_CMF161C
Help
Entry
CYME_CMF161C CDS
T00175
Name
(RefSeq) similar to cleavage and polyadenylation specific factor 4, 30kD subunit
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMF161C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMF161C
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMF161C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CYME_CMF161C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CYME_CMF161C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_4
zf-CCCH_3
zf-CCCH_11
zf-CCCH_10
CSL4_N
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
16992977
NCBI-ProteinID:
XP_005535803
UniProt:
M1VB83
LinkDB
All DBs
Position
6:447980..448546
Genome browser
AA seq
188 aa
AA seq
DB search
MTINQNEQEIIYEFEKYTGLAQQEYDDQTAPGKDTDICQAWLENRCERGDLCQYRHSRSK
SLIVCKHWLRGLCKKGIECEFVHRFELDKMPECFFFSRYGECTNDECMYRHVVADSRRME
CPFYARGFCKHGPRCRYKHVQKVACANYLGGFCPKGPACRFGHAKFEIDLQQVLHEAERF
GDRSVSWR
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgacgattaatcaaaacgagcaggaaatcatttatgagtttgaaaagtacaccgggtta
gcgcagcaggagtacgacgaccaaactgcacccgggaaagatacagacatatgccaggcg
tggttagagaaccgctgcgaacggggcgacctctgccagtaccgccactctagaagcaag
tcactgattgtctgcaaacactggttacgtggactatgcaaaaaaggtatagagtgcgag
tttgttcaccgttttgagcttgacaagatgccagagtgtttctttttcagtcgctacggc
gagtgcaccaacgacgagtgcatgtaccgccacgttgttgccgactcccgacgtatggag
tgtcctttctatgcccgtggtttctgcaaacatggaccgcggtgtcgttacaagcacgtg
cagaaagtagcgtgtgcgaattatttgggcggtttttgtcccaagggaccagcgtgtcgc
tttggacacgccaagtttgagatcgacctgcaacaggtgctgcacgaggcggaacgattc
ggtgatcgcagtgtttcctggcgctag
DBGET
integrated database retrieval system
