Cyanidioschyzon merolae: CYME_CMF174C
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Entry
CYME_CMF174C CDS
T00175
Name
(RefSeq) similar to tight junction plaque protein Symplekin
KO
K06100
symplekin
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMF174C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMF174C
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMF174C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CYME_CMF174C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CYME_CMF174C
U7-dependent histone pre-mRNA processing factors
CYME_CMF174C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SAP
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
16992966
NCBI-ProteinID:
XP_005535812
UniProt:
M1UPX3
LinkDB
All DBs
Position
6:complement(485938..489996)
Genome browser
AA seq
1352 aa
AA seq
DB search
MDGSSESKPETTQSSERWKRWVEASEQTSRLLPPEHPLWWYRAVSYEPNEHVQRTAALIP
HLLKEPIDWIEQDLGTTSQAGSDAPWLSSCVAEWPRHLATLLAKSLPVNGAAVLGAATAT
LRRLVENPEAPLRRMRLLLLVNSLLRSLRTILEALTCEDWTLLGASRTTTAAEEVQHRPE
PLEQPRQQVAADVAQLLDRVFAADTFADASGIARLQSQLFKLAELVVLSFTFSPVDWSSR
SFSGRDAARLADVISPVKCQEWVEQALSRLAETPAGASFVPLLTRASSLASIARRRAELA
VRTLVPLYDVAFKESLHVRRISQKQSIALNMRILFLCLLRCPHMLPFKEELYAALELFGA
EDQAEAAANTAEECERQLALQQGSVAPWSRVVQDGPTCRQLEDSEQVARLLVTRSAVSPA
SLEELVLETLRQMPTSRPIQAAPDDESSRMDPRLRAQVLAAQQSQRTQVESIRKHLKTLL
AEEVKRRRPVIRAQAPEVRALPLTAEQWETLGEQAVRRLLQAEDAMELCGANDLRLSLLA
RLLAQASYGESSLSEEVVDFIVQDFSGRMELALRWLTALVACDAELRGAPEEPPRGLKRS
HSEIRADLDASASKRERLAAPWQRDAAAEPGTERDDRIPTAETLAAVDATNGNAAGVKRE
LPAHDHSRDTDDKSAPAADASRVHQSASANSNQTGAAPKEAPNTAMPEQLDVDLDESKAK
RLTVAALRAELARRHLDAKGTKKVLLERLLHARAEERQRLSAEVGERAASTDAAVETSDA
SSNQASTDTPQDADKPVKPQASQMDLASASSESPSSTLAAAAAAAAHTDTAQRIPDTALP
MLTPADPALHTAELGVIRARVAKALRESALLDEDKSASLLAIAESDTAFPEARYERLLDT
LLERLTSHAKVPDSLLARFLAELPRVPPWVYVLLSQMATEPRRAFSALAALKELCTLRYS
VDRERALDTTLELCCSDDELVRGPASRLVADTLFAEHALLAPWIAHRLQLWLSKALERAL
LNASPSPAAERYRLRLERLAATYLALVRHDVTLLEFYVNELYARASTDASLAASLQRLCG
DRALFRWSATSDRLEALIREAPIPETSPLIVQIVELVAETLFNQTGKLPSSLVDAVWQRY
QREGRVSLLLLLPVLRALSAEQARQVLPSLVQQLDADQRRLAWERLVLVASGRTTPPLTP
SALVEALHRLDSKSEAIPLKLQIEAVQTCFEMDTIFTAQCWASALQSMVRSPHPLPVMLM
RTLLQVVARYPKTQHLILQLLTTLVTERRIWEYPKLWPGFIRACVLLMPQSASLVVAHLP
SAVLDRALRESAELREALAAFAEAHAENEHRG
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atggatggaagctcagaatccaaaccagagacaacccagagctctgagcgatggaaacgc
tgggttgaggccagcgagcaaacctcgcgcctcctgccaccagagcacccgctctggtgg
taccgcgcagtctcctatgaaccgaacgaacacgtacagcgaactgctgcgctgattccg
catctgctcaaggaacccatcgactggatcgagcaagacttgggcactacctcgcaagct
ggctctgatgcgccctggttgtcgagttgcgtcgccgagtggccgcgacacctcgccacg
ctgctggcaaaaagtctcccagtaaacggagcagctgttcttggggcagctactgcaacg
cttcggcgccttgtcgagaacccggaggctcctctcaggcgcatgcgactgctgttactg
gtgaactcgttgctgcgctcacttcgcactattctggaggcactcacctgcgaagactgg
actttgctgggtgccagccggaccacaactgctgcagaagaggtccagcatcgccctgaa
ccgctagagcagcctcggcagcaggttgcagcggatgttgcgcagctgctggaccgtgtt
ttcgctgcggatacattcgcagacgcaagtggcatcgcgcgccttcagtcacagcttttc
aaactcgctgaactcgttgtgctctccttcactttttcgccagtggactggagctcacgc
tccttctcagggcgggatgctgcacgacttgccgatgtcatcagcccggtgaagtgccag
gaatgggtagagcaggcgctctcgcgtctggcggagacgccagctggcgcctcgttcgtg
ccgttgctgacgagagcctcctcgttggcgagcatcgctcgtcgacgagcagaactcgca
gtgcgtacgctagtgccgctgtatgatgtggcgttcaaggaatcgttgcatgtgagaagg
atttcgcagaaacagtccatcgcactgaacatgcgaatcctctttctctgtctcttgcgc
tgtccgcatatgctgccgttcaaggaggaactgtatgctgcattggagctattcggcgct
gaggatcaggcagaagctgctgcgaatactgccgaggaatgtgagcggcaacttgcgctc
cagcagggcagcgttgcgccctggagccgggttgtgcaagacgggccgacgtgtcgccag
ctggaggacagtgagcaggtcgctcgtctccttgtcacgaggagcgctgtctcacctgca
agtttggaagagcttgtgctggagacgctgcggcaaatgcccacgagccgcccgatacag
gctgcacccgacgacgagagcagtcgcatggatccgaggctccgagcgcaggttcttgca
gcacaacagagtcagcgtacgcaagtggagagcatccgtaagcatttgaaaacgctcctt
gcagaagaggtgaaacgacgtcgtcctgtaatacgggctcaggcgccagaagtacgagcg
cttccgctaaccgcggaacaatgggaaacgctgggagagcaagcggtgcggcgcctcttg
caggccgaggacgccatggagctctgcggggccaacgacctgcgcctctccttgttggca
cgcctgctcgcacaggcaagctatggagaatcctcgcttagcgaggaagttgtcgacttt
atcgtgcaagacttttccggtcgaatggagctggcgttgcgatggctcacggcgctggtc
gcatgcgatgctgagctgcggggagcacctgaagagccgccccgtgggctgaaacgctcg
cacagcgagatacgcgctgatctagatgcttctgcctcaaagcgggagcgactcgcggcg
ccttggcagcgtgacgcggctgctgaacccggcactgagcgcgacgatagaataccgact
gcggagacgcttgctgcggtggatgccaccaatggcaacgctgcaggagtgaagcgcgag
ctgccagctcacgaccattcaagagacacggatgacaagtctgcgcctgctgcggacgca
tcccgcgtacaccagtcagcgtccgcgaattccaatcaaacaggtgcagcaccgaaggag
gcaccgaatacagcaatgcctgaacagctggacgtcgacctggatgagagcaaagcgaag
cggctaaccgttgcagcattgagggcggaactggcaaggcgccatctggatgccaagggc
accaagaaagtgctcctagagcgattgcttcatgcgcgtgccgaagagcgccagcgtctg
agtgcagaggtaggcgaacgtgccgcgtctacagatgctgctgtcgagacctcggacgcc
agcagcaatcaagcgtctaccgacacaccgcaagacgcggacaagcccgtcaagccgcaa
gcgtcgcagatggacctggcgtcagcatcgtcagagtcaccgtcatcaactctcgctgct
gctgctgctgctgctgctcatactgatactgctcaacgcattcctgacaccgcattaccc
atgttgacaccagctgaccccgctttacatacagcggagctgggcgttatacgcgctcgc
gtcgccaaggcgctacgcgagtctgcgctgctcgacgaggacaaaagtgcttcgctcctt
gccatagccgaatcggataccgcattccccgaagcacgctacgagcgtctgctggatact
ctacttgagcgtctcacatctcatgccaaagttcccgactcactcctagcccgtttcctc
gctgagttacctcgcgtgcctccatgggtgtatgtgctcttgtcgcagatggcaacggaa
ccccgtcgggctttctctgccctggctgcgctcaaggagctctgcaccctacgttacagt
gtcgatcgcgagcgtgccctggacacaacgcttgaactctgctgttctgatgatgaactg
gtgcggggaccggcctcacggctcgttgcggacacgctttttgctgagcatgcgctccta
gcaccgtggatcgcgcaccgactccagttgtggctgagcaaggccctggaacgtgccctg
ctgaacgcttcaccgtcaccagcagctgaacgatatcgtttgcgtttggaacgtctcgct
gcgacgtatctcgcactggtccgacacgacgtgacgctactcgagttttacgtgaatgaa
ctgtacgcacgagcgagcaccgatgcgtcacttgccgcgagcttgcagcgtctctgtggc
gatcgagcgctcttccgttggtcggcgacgagcgatcgtctcgaagcgcttatccgagag
gcaccgatcccggaaaccagtccactgattgtccagatcgtggaactggtcgcggaaacg
ctgttcaaccagacaggcaaactgccgtcatcgctagtcgatgcggtatggcagcggtat
cagcgcgaagggcgcgtatcgctgctgctcttgttgccggtactcagggcactgtccgcg
gagcaggctcggcaagtgctcccgtcactcgtccaacagctggacgctgatcaacgacga
cttgcctgggaacgtctggtgctggttgccagtggacgtaccacgccaccgctgacaccg
agcgcgcttgtcgaggccctgcatcgtctcgactccaagtccgaggcgattccgctgaaa
ctccagattgaggcggtgcaaacctgcttcgagatggacacgatattcactgcgcagtgc
tgggcaagtgccctgcagagtatggtgcgttccccgcacccgctgccggtgatgctcatg
cgaacgctgcttcaggtggtggcgcggtaccccaagacccaacacctcatcctgcaactg
ctcacaacgctggtcactgagcgtcgtatctgggaatatccaaaactatggccgggtttt
attcgggcatgtgtgttgctgatgccacagagcgcgagtctcgtggtggcgcatctaccg
agcgctgttctagaccgagcgctgagggagtcggcggaactgcgcgaagcacttgcagcg
ttcgcggaagcgcatgctgaaaacgagcatcgcgggtga
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