Cyanidioschyzon merolae: CYME_CMG044C
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Entry
CYME_CMG044C CDS
T00175
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase PRP22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CYME_CMG044C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cme03041
]
CYME_CMG044C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CYME_CMG044C
Spliceosome [BR:
cme03041
]
Complex C
Other components
Step II factors
CYME_CMG044C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_16
Motif
Other DBs
NCBI-GeneID:
16993298
NCBI-ProteinID:
XP_005535858
UniProt:
M1VBB5
LinkDB
All DBs
Position
7:complement(119414..123292)
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AA seq
1292 aa
AA seq
DB search
MVGVAESPCVDFNCTARCLLGLGNPHLIDVLREAALESGSVNVFLERISGTFGDKLAGTL
DEALGWRLWVAAQREAGEVRVQCTEAKADALGADTGQTGKRQRKSRWQIVPSQPKSVKAG
PCSCSGVDWTGFTLGALNQLDASAASTLAAAAAAAGYPQTVSSISGCHREIPDEAERSCV
ELYEAAQDTTGRWSVSAAFRWAPFLDTLGLRESTSRSLEHLVTKFSGDSSSRPRLWEAAV
PKLWRTPGELCRASRNGSGLLLWWLQHGKDLVSSDSLSLTEGIERYVEHGSAGFGAGIRS
TTRTCALTSTAAPDENTASTRSAACSGQKSVGGDETASPDDKTTLQSGKKRQSPATNPAP
AVADAAAQRILGKVATGIGLENVDATKRIASRSRDSSHDRIAFPPNIVPIRCTSVPSIAD
SEPGDRLHISSHRMDKSTDNAGDVYEPRALGQIQIPSVPNACRLPCAGNSIVPCPPNASM
CAEAERNRSSEPAAASAATCENRVSEMTRAEVYGLLDQDPESTMTRNAVSRGIVHETHGG
TAWVPGAGSTALPIAQCEAVLLDLVERFPVVLVVGETGSGKSTQIPQFLWKAGWTRRRHR
HRFDGGEASTQLEEPGGRVVGRWIGCTQPRRLAATRLASRVAAEMQTSLGGLVGYTIRFD
DRTGPETEIKYMTDGVLLREAAMDPTLSAYNVLIVDEAHERSLHTDLLLTVLKRRLYDSN
AKAAHETVQQRLLIASATLDAGHFTSFFANAPVLEIPGKAYPVEIHWVPLPRWRMPKQRT
SGGGRFATDYLAAAVTLALDIHFREADGDILAFLPGQDDVEAAVGITRERAEAAERALDV
STSPKRRLVVLPLYANMSLAQQQQALARSAPGTRKCIFATNVAETSLTIDGVRYVIDSGL
AKQKVFLPNGLAGVERLILSPISQASARQRAGRAGRTAPGHCFRLYSRGSWEQELLPQPI
PEISRTDLSQLILNLLQLGVIERATELLERRNGRPVVEFLDPPPAARLVLAMQHLWMLAA
LEDATGQLTPVGARLAQLPLDPRLGRFLLAAVDLRCLDEALTIVSMLSVGAGESSTGGDV
WLRPRDPVERLAASRAQEQLFAAAGDIHRLLQVYSAWTAASCSTEWCEQHFVQCRALRRA
RSIRHQLERMLHLEALRKSQLQQTPRLSECGFEAGASSPITLPLEQRITLAFLSGFYTNI
ARLTWFRGQPFYLVLSPFARPWRGVGRRMSKNPAPDASLASIHPSSCLRNVTPPLLAFAE
LVETQKLYLRCCVVVPNEQWLRRFFAQSQCRH
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggtaggggtagcggagtcgccgtgcgttgactttaactgcacggcacgttgcctgctg
ggactcggtaacccgcacctcatcgatgtacttcgtgaggcggcactggaaagcggcagc
gtgaatgtgtttctggagcgtatttcgggaacgtttggagacaaacttgcgggtacgctc
gatgaagcactcggctggcgactctgggttgctgcacaacgagaggcgggagaagtgcgt
gtccagtgcaccgaggcgaaagctgacgcattgggcgcggacaccggacaaactggaaag
cgtcaacgcaaatctcgatggcaaatagttccgagtcaaccgaaaagcgtgaaagcaggt
ccatgcagttgcagtggcgtcgactggactggatttacgcttggcgcgctgaaccaactg
gatgccagcgcggcatctacactggcagctgcagctgcggctgctggatacccgcaaaca
gtatcgtcgatcagcggttgccatagagagatccctgatgaagcagagcgttcatgtgtc
gagctctatgaagccgcacaggataccactgggcgctggtctgtgtctgctgctttccgc
tgggctccttttttggacacgctggggttacgtgaatccacgagccgctctttagagcac
cttgtgaccaagttttctggcgattcgtcgtctcgacctcgtctctgggaagcggctgtt
ccaaagctgtggcgcacacctggtgaactttgccgtgcatcaagaaacggcagcggcttg
ctgctgtggtggcttcagcacggcaaagacttggtttcctcggactctttgtcgcttact
gagggcatcgaacggtatgtggagcacggtagtgctggcttcggtgcaggaattcgttca
acaacaaggacttgtgcgcttacgagtactgctgcacctgacgagaacactgcatcaaca
cgttccgcggcttgtagtggacagaaatccgtcggtggtgacgagacggcctctccagat
gacaaaacaacgttgcaaagtgggaagaaacggcaatcaccggctactaatccagcacca
gcagtagcagatgcggcggcgcaaagaatactcggaaaagtggcaacaggtattggatta
gagaacgtagacgcaacaaaaagaatcgcgtcccggtcaagggattcgagtcatgatcgg
atagcctttcccccgaatatcgtgcctattcgctgcacttcagtgccttctattgccgac
agtgaacctggcgacagactgcacatctcgagtcatcgcatggacaagagcacagacaac
gcaggcgatgtctacgagccacgcgctttggggcaaatccaaataccctcggtgccgaac
gcatgccgtctaccatgcgcaggtaatagcatcgtgccgtgtcctccaaacgcctccatg
tgcgcagaagcggaacgcaaccgaagctcagagcctgcagcagcatcagcggctacatgc
gaaaacagagtatctgaaatgacgcgtgctgaggtttacggtcttcttgatcaggatcca
gaaagcaccatgactagaaatgcagtttcacgtggcatcgtgcacgagactcatggaggc
actgcttgggttcccggggcaggcagtaccgcactgcctatcgcccagtgcgaagcagtg
cttcttgacctcgttgagcgcttccctgttgtgcttgttgtaggtgaaactggatcaggc
aagtccacacaaatcccgcagtttctctggaaggcaggttggactcgtcgtcgtcatcgt
catcgctttgatggcggtgaagcgagcacccagctcgaagaacccggtggacgtgttgtt
ggcaggtggataggatgcacacagccgcgtcgccttgcggcaactcggcttgcaagtcgc
gttgccgcagagatgcaaacatccctgggcggtctagtcgggtacaccatccgcttcgat
gaccgcactggcccagaaacggaaatcaaatacatgacggatggggtgctgctgcgggaa
gcggctatggatccaacgctgtctgcatacaacgttctcatcgttgacgaggcgcacgag
cgctccctccataccgacctgctgctcacagtcctgaagcgccgtctgtatgactccaac
gcgaaggccgcccacgagacggtccagcagcgtctgttgattgcaagtgccacacttgat
gccggccatttcacctcttttttcgccaatgctccagttttggagattcccggcaaagcg
tatcccgtagagatacattgggtaccactccctcgctggcgaatgccgaaacagcggacc
agcggcggtggacgctttgccaccgattatctcgctgctgctgtgacgctagccctagat
attcacttccgggaagccgatggggatattctggcctttcttcccggacaggacgatgtc
gaggcagctgttgggatcactcgggaacgtgcggaagccgctgagcgtgcgctcgatgtg
agcacctctccgaagcgtcgtctcgtggtgctcccgttgtacgcgaacatgtcgctcgca
cagcaacagcaagcgcttgcgcgttcagcgcccggcacccgcaaatgcatctttgcgacg
aatgttgcggagacctcgctaacaatcgatggtgttcgttatgtgatcgattcgggtcta
gcgaaacagaaagttttcctcccgaacggactagcgggtgtagaacggctgattctgagt
ccaatctcacaggcatcggctagacagcgcgcaggtcgagcgggccgcactgctcctggg
cactgtttccgcctctattcacgaggttcttgggagcaggagctcttgccgcaaccgatt
ccggagatttcccgaacggacttgtcgcagttgatcctgaacttgctgcagctgggtgtg
atcgagcgcgctactgagctgctcgaacgccgaaacgggcgtccagtggtggagttcttg
gatccgcctcctgcagcgcggctcgtgcttgcgatgcagcatctttggatgctggctgca
ctagaggatgcaacgggtcagctgactccagtgggcgcacgtctcgcacagctgcctctg
gatccgcgtcttggtcgctttctactcgcagcggtcgacctccggtgcctagacgaggca
ttaacgatcgtatcgatgctttccgtgggagccggcgagagcagcaccgggggtgatgtg
tggcttcgacctcgcgatcccgtggagcgactcgctgcctcccgcgcacaggagcagctc
tttgcagccgctggcgatattcatcgtttgctgcaggtgtatagtgcgtggacagctgca
tcctgtagcaccgaatggtgcgagcagcatttcgtccagtgtcgggcgcttcggcgagcg
cgtagcattcgacaccaactggaacgcatgctgcacctggaggcgctacgaaaatcgcaa
ctgcagcaaacacctcggctgtccgagtgcggttttgaagcaggtgcgtccagcccgatt
acactgcctctagagcagcgtatcactctagccttcttgagtggattttatacgaacata
gcacgtttgacgtggtttcgtggccagcccttctacctggtgctttctccgttcgcgcga
ccttggcgcggagtcgggcgccggatgtcgaagaacccagcacccgatgcctcgcttgcc
tcgatacatccatcgagttgcctgaggaatgtgacgccgcccctgttggcctttgccgag
ctcgtggaaacccaaaagctctaccttcgctgctgcgtcgtggttcccaatgaacaatgg
ttgcgacgcttcttcgctcagtcgcagtgccgccactga
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