KEGG   Cyanidioschyzon merolae: CYME_CMG106C
Entry
CYME_CMG106C      CDS       T00175                                 
Name
(RefSeq) probable flap structure-specific endonuclease 1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03030  DNA replication
cme03410  Base excision repair
cme03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CYME_CMG106C
   03410 Base excision repair
    CYME_CMG106C
   03450 Non-homologous end-joining
    CYME_CMG106C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cme03032]
    CYME_CMG106C
   03400 DNA repair and recombination proteins [BR:cme03400]
    CYME_CMG106C
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cme04147]
    CYME_CMG106C
DNA replication proteins [BR:cme03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CYME_CMG106C
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CYME_CMG106C
DNA repair and recombination proteins [BR:cme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CYME_CMG106C
Exosome [BR:cme04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   CYME_CMG106C
SSDB
Motif
Pfam: XPG_N XPG_I 5_3_exonuc 5_3_exonuc_N XRN_N Sigma70_r1_1
Other DBs
NCBI-GeneID: 16993240
NCBI-ProteinID: XP_005535908
UniProt: M1VBE4
LinkDB
Position
7:271629..272771
AA seq 380 aa
MGIRQLAKLIVDHAPRAYKEQDIRALFGRVIAIDASMCIYQFLVAVRTADAANLTNESGE
ITSHLSGVFYRTIKLLELGIKPIYVFDGKAPDLKANELAKRRSRREEDEQAAAKAREEGD
LELYAKYARRVNKVSAETIDNVKRLLRLMGIPVVEAPSEAEAQCAVLTRAGLAYATASED
MDALTFGTPLLIRNLFAALASGAERKDRKPSEFSLAITLEDLGISMDQFIDICILCGCDY
TCTIPKIGPYRALMLVKQHGCIEEVLASLRESNHPIPDDFDYLGARGLFKEPHVKDAADI
EPLLEWHAPNEEGLVQFLVQENSFNEQLVRKAVERMTKALRSGVANQSRLDNFFKPKTLP
KKHEPERPSSKRSTKRARKT
NT seq 1143 nt   +upstreamnt  +downstreamnt
atgggtattcgacagctggcgaagcttattgtggaccatgcgccacgagcatataaagaa
caagatattcgggcgctctttgggcgggtcatcgccatcgacgcgtctatgtgcatctac
cagttccttgtggcggtgcgtacggcggacgctgccaacctcaccaacgagtctggtgag
atcacctcgcacctctcgggagtattttaccgcaccatcaaacttctggagctgggtatc
aagcccatatacgtctttgatggcaaagcaccggatctcaaagcaaatgagctcgcaaaa
aggagatcccggcgagaggaagatgagcaggccgcagccaaggctcgcgaggagggcgac
ctcgagctctatgcaaagtacgctcgacgggtgaataaagtctccgcggagaccatcgac
aatgtgaagcgtttgttgcgcctcatggggatacctgttgtcgaggcgcccagcgaggct
gaggcccagtgcgctgtcctcacccgagcaggtcttgcctatgcgacagccagtgaggat
atggatgcgctcacgtttggtacaccgcttttgataaggaatttgtttgcagcgctggca
tctggagccgaacgcaaagatcgcaaaccgagcgagttctcgttagcgataacgctagag
gatctgggcatctctatggatcaatttatcgatatatgtattctgtgtggttgcgactat
acctgtacgataccgaaaatcgggccctatcgggctttgatgctggtcaaacagcatggc
tgcatcgaggaggtgcttgcatcgctgcgggaatccaaccacccgatacccgatgatttt
gattacctcggagcacgaggactctttaaagagccgcacgtcaaggatgctgcagatatt
gaaccgcttttggaatggcatgctcctaacgaagaaggactcgtgcagttcctggtccag
gagaacagcttcaatgaacagctggtgcgcaaagccgtggaacgcatgacgaaagccctg
cgatcgggggttgcaaatcagtcgcggctggacaattttttcaagccgaaaaccttgccc
aagaagcatgagccagagcggccatcatcgaagaggagcacgaaacgagcacgcaaaacc
taa

DBGET integrated database retrieval system