Cyanidioschyzon merolae: CYME_CMG179C
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Entry
CYME_CMG179C CDS
T00175
Name
(RefSeq) RNA polymerase III largest subunit
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CYME_CMG179C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMG179C
Enzymes [BR:
cme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CYME_CMG179C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
CYME_CMG179C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6818
Transketolase_C_1
Motif
Other DBs
NCBI-GeneID:
16993162
NCBI-ProteinID:
XP_005535963
UniProt:
M1VBH9
LinkDB
All DBs
Position
7:459289..465081
Genome browser
AA seq
1930 aa
AA seq
DB search
MSVKGAQVDTAHGALDREIFDNGFPSDNGGCRDSDQGIPPHTGAVNAMLRNLSTSVPFDA
SVYGSYTFVHESWEPCPTAVNAWQRLCEVWRARQELQQIERQLEQVRRRASSLLPMQKTS
SETNQDAMTTNVYRTTYAQIHRLLLEREQARRALSARPVTLRDDTQVLSRSLEAIQFRIP
SVDDIRRASVIEMNRKQLYTPEHDIVPHGALDKHLGVSDKNERCATCGLSLADCAGHFGH
IELVLPVFHVGYLSFLLQVLQCICKRCSGLLADAQFVEHLRHQQREHRARNTPGYLQSLL
KRHLEWAKRSSICRHCGAPNGLVRKVSSPREWLATASAAATSSSTTCTQRDGSGGIATRA
ASGLRSNSSMSHTGAPRLVHELMPRAGWSHRQYLQLELYLAHWYERASFAAGRNLRRCPA
DQVIAQKAPTAQASSIAGVLMHTADGDKDDLDSDHNEFNALPSALGKPAASGASLSAAVA
ARRMMHRSRKAHFAFELTPLHVLELLRNIAPADLEALGMDPDTTRPEDMLLRCVAVPPVC
IRPSVCNDPSQGSTEDDLTIMLADIAGANALVMEQLVKGSDLGKLLDAWDHLQLAVARYI
HADYPGLPASLYYKAQIGLCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLSIDQVGV
PLRIAKILTYPERVTPWNIDQLRKSVLRGPDRHPGANYVLFPDGSKRFLRFGDREDIARS
LCVGCVVERHLRDGDLVLFNRQPSLHRLSIMAHSVKVIAGRTFRFNECVCAPYNADFDGD
EMNLHVPQTEEARAEARALLAVPQNLLSPRNGEPLIACTQDFITALYLLTHKDVFYGRWA
AVQCLSFGLEPEASAAILGRLPEPAILHPLPLWTGKQLFSALVQADPALSDEAVRVLICF
DATEKAYTHEGIWCRADAYVCVRSAELISGQVAKRTLGSQSKQSLLYVLQREAGPLLAVR
CMNRLARFASRWLSEYGFSFGIDDVRPSPALEHAKAVRIRNAYTQVQDAIERYRAGVMRP
RPGYTDEETLEWHIHRLLSDLREHAGQVCLQEMAPHNTAMIMAMSGAKGSTINISQMVAC
VGQQTVNGTRVRAGFHQRTLPHFMRGDKSPEAGGFVANSFYSGMNAIEFFFHSMAGREGL
VDTAVKTAETGYMQRRFMKALEDLRVAYDDTVRTSDASLVQLRFGGDGLDPLEMEASDGQ
AIDWERLWTTVQWLDAHSDPLVERALGGRFLADSVPSAVAVAMPDTGSAQALPGASHRYQ
QQQQQQQRLQQQRRSWTLASPRMQPEPERMVDDLQRPLLEALEAADPSTAAFEQQQQQVP
LSWPGRVRQGVLALATRHSPLTPRQWQLLMTLTERKLRRALIEPGTAVGAIAAQSIGEPS
TQMTLKTFHFAGVASMNITQGVPRIKELVNATRRIATPLVTAYLETTAPGQQEPRALAYN
LQRRLECRRLKQVIRYGEVRWNASGVYLDYVLDERFVAEYGLHAIDAKASATLEASGAKA
LPNMTGISQVESLCRRLRAQLPWPALSEEEDTCNDPRRDESTGNVRVVYANGSSDGSDDD
VVHLQFWPPSALARSRPTRRRMGSASAAAAVAATAAATTETNVADWEPALAQLQRLVPEL
VVSGLASIARVVWSQALSPASDSAGKSGEAAAAAAAASAATESIQLLAETEDMRSVMNTQ
GIDASSVYCNHVLVVEQVLGIEAARSTIVKEVLETMAAHGVTLDARHVDLLSDMMTQSGQ
VLGITRFGISKMRQSTLMLASFEKTVDHLFEAAVRSRSDRIRGVSERVIMGKPVPLGTGM
VSVGYVECPERVALAPQRDATCSGSEEAVSSSLEGTSRSRSRPEAIQSADDEAPRDVDRP
ATERGVDRITNGTTTAVAAAAAGGDADETFAAMPFPNQKRLAWHLLRPPEAATWSRNCNR
REKATIVHEQ
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaagggtgctcaggtcgatactgcacacggagcactcgacagagaaatcttt
gataatgggtttccatccgataatggtggctgcagggacagcgatcagggcatcccgccg
cacacaggcgcagtcaacgcgatgctccggaacctgtcaacaagcgtgccgttcgacgcc
tccgtctatggtagctatacctttgtgcacgagtcctgggaaccgtgtcctactgcagtc
aacgcttggcagcgtttatgcgaagtctggcgagcgagacaggagctgcaacagatcgag
cgtcagctcgaacaggtgcggcgcagagcgtcctcgctgctgccaatgcagaagaccagc
tccgaaacgaatcaagacgcgatgacgacaaacgtctaccgcaccacatatgcccagata
catagactactgctcgaacgcgagcaggcgcgacgagcgctctccgcgcggcccgtaacg
cttcgcgacgatacacaggttctctcccgcagcctagaggctattcagttccgaatccct
tccgtcgatgatattcgacgcgcttctgtgattgaaatgaaccgcaaacaattgtacacc
cccgagcacgacatcgtcccgcacggcgcactggacaagcacctaggcgtcagcgataag
aacgagcgctgtgcaacctgcggactctccctggctgactgtgccggccatttcggtcat
atcgaactagtgcttcctgtgttccacgttggctatctgagtttcttgcttcaagtactc
cagtgcatctgcaagcgctgtagtggcctacttgcagatgcacagttcgttgagcatctg
cgtcatcaacaacgtgagcatcgcgctcgaaacacaccgggctaccttcagagcctcctc
aagcgccacttggaatgggccaagcgctcctcgatctgccgacactgcggcgctccgaat
ggtctcgttcgtaaagtcagcagcccgcgggaatggctcgccactgcatccgcggcagcg
acaagctctagtacgacttgtacgcagcgggatggcagcggtggcatcgcaacacgagcc
gcctctgggctgcgctcgaattcctcgatgagccatacaggagcaccgcgactcgtgcat
gaactgatgccccgggccggctggagccaccgccagtacctccaacttgaactttacttg
gcgcactggtacgaacgggcgagctttgcagctggaaggaacttgcgtcgatgcccagcg
gatcaggtcattgcacagaaggcgcccactgcacaggccagttcgatcgctggagtcttg
atgcacaccgcggacggcgataaggacgacttggacagcgaccacaacgagttcaacgct
ttaccgagcgcactgggcaagccagcagcctctggggcgtcactgtctgctgccgttgca
gctcgcaggatgatgcatcgctcccgcaaggcacactttgcattcgagctgacgccgctc
cacgtactggaactgctgcgaaacattgcaccggcggaccttgaagcactcggcatggat
cccgacaccacgagacccgaggatatgctcctgcgctgcgttgccgttccgccagtctgc
attcgtcccagcgtttgtaacgatccatcccaagggagcactgaggacgatctcacgatc
atgcttgccgatatagcgggtgcgaatgctcttgtgatggagcaactggtcaaaggcagc
gatttgggcaaactgctcgatgcttgggatcatttgcaactcgctgttgcccgctacatt
catgcagactatccaggtctaccggctagtctctactacaaggcacagatcggtctctgc
caacgcctgaaaggcaaacaggggcgcttccggggaaatctctcgggcaagcgggtcgac
ttttcggctcgaacggtcatatctccggacccgaacttgtccatcgatcaggtgggtgtt
ccgctgcggatcgcgaagattctcacctacccggagcgcgtcacgccctggaacatcgac
cagctgcggaaaagtgtcctgcgaggcccggatcgccatccaggtgccaactacgtgctc
tttcctgatggaagcaagcgttttcttcgctttggtgaccgcgaggacatcgctcgcagt
ctctgcgtgggctgcgtcgtcgagcgtcacctccgagacggtgacctggtgctcttcaat
cgacaaccgtcgttgcaccggctttcaatcatggcgcactcggtgaaagtgattgctggt
cggaccttccgcttcaatgagtgcgtatgtgcgccctataatgccgactttgatggcgac
gaaatgaacctgcacgtgccgcagaccgaggaggcgcgagcagaagcacgagcgttgctt
gccgttccccagaacctgctctcgccacgcaacggtgagccgctcatcgcctgcactcag
gatttcatcaccgcgctgtacctgctgacccacaaggacgtcttctatggacgctgggct
gcggtccagtgtctgagcttcggcctggaaccggaggcatcggcagcgatccttggacgc
ctgcccgagccggcaattctccatccgcttcccttgtggacaggaaagcagctcttcagc
gcgctggtgcaggccgatcccgccctcagcgatgaggcagtgcgcgtgctcatctgcttt
gatgcaaccgagaaagcctacactcatgaaggcatctggtgtcgtgccgacgcctacgtc
tgtgtccgatccgcggagctcatcagtggccaggtcgcgaaacgaacgctgggctcccag
tcgaagcagtccctgctctacgtcctgcagcgagaagcagggccactgcttgccgtgcgc
tgcatgaaccgcctagcccgtttcgcgagccgttggctctctgagtacggcttcagtttt
gggatcgatgatgttcgaccctcgccggccctggaacacgccaaagctgtgcgcattcgc
aacgcctacacccaagttcaggatgctatcgagcgatatcgagcaggtgttatgcgacct
cgccccggttacaccgacgaggagaccctcgagtggcacattcatcgactcttgagcgac
ctgcgcgaacacgctggacaagtatgtctccaggagatggcaccccacaacactgcgatg
atcatggccatgagcggggcgaaaggcagcaccatcaacatctcccagatggtggcttgt
gtcggacaacagaccgtgaacggtacgcgcgtccgagcagggtttcaccagcgcacactg
cctcattttatgcgcggggataagtcaccagaggcaggtgggtttgtggcaaactcgttc
tattcagggatgaacgcaatcgagttcttcttccattcgatggcgggacgcgagggcctc
gtagataccgcagtgaaaaccgcagaaaccggctacatgcaacgccgttttatgaaagcg
cttgaggacctccgcgtcgcatacgatgatactgtccgcacaagtgatgccagtctggta
cagttgcgctttggcggtgacggtctggatcccctggaaatggaagcgagcgacggtcaa
gctatcgactgggagcgactctggacgacggtgcagtggctggacgcacactctgatccg
ctggttgaacgggcgctcggtggacgcttcctggcggatagcgttccgagcgcggtcgcg
gtagcgatgcccgacactgggagcgcgcaggcgttgccaggcgctagccacaggtatcag
caacaacaacaacaacaacaacgactacaacaacagcgtcgatcctggacgttggcgtcg
ccccggatgcaaccagagcctgaacgcatggtcgacgacctacagaggccgcttctagaa
gcgctggaggcagcggacccgtcgacggctgctttcgagcaacagcaacagcaggtccct
ctaagctggccggggcgtgttcgccaaggtgtactagctctggcgacacgacacagtccg
ctgacgccgcgacaatggcaactgctgatgaccctaacggaacgcaagctccggcgagcg
ctcatcgaacctggaaccgcagtcggtgccattgctgcccagtcgattggggaaccgtcc
acccagatgaccctcaagacgtttcattttgcaggagtggcgtcgatgaacattacccag
ggcgttccgagaatcaaagagctcgtgaatgcaacccgtcggatcgcaactccgctggta
actgcatacctggagacgacggctccagggcagcaagagcctcgggcgctcgcctacaac
ctgcagcgtcggctggagtgtcgacgtctcaaacaggtcattcggtatggagaagtgcgc
tggaatgcatccggtgtatacctggattacgtcctcgacgagcgctttgtcgccgagtac
ggtcttcatgccatcgacgcaaaagcgtctgcaacattggaagccagtggagcaaaggcg
ctgccaaacatgactggaatttctcaggttgagtccttgtgtcgtcgtttgcgcgctcag
ctgccttggccggcactctccgaggaagaggacacatgcaatgacccccgtcgtgacgaa
tcgaccgggaacgtccgtgtggtatacgccaacggtagcagcgacggcagcgacgacgac
gttgtccatctccagttttggccaccgagcgcgttggcacgttcacgacctactcggcga
cgaatgggcagcgcctcggcagcggcagcagttgcagcaacagcagcagcaacaacagag
acaaacgttgcggactgggagccagcgctcgctcagctgcaacgtctcgtaccagagctg
gttgtcagtggacttgcgagcatcgctcgcgttgtttggagtcaggcgctctctcctgcg
agcgatagcgctgggaaaagcggggaagctgctgccgctgctgctgccgcttctgctgct
accgagtctatccagttgctcgctgaaaccgaagatatgcgttcggtgatgaatacgcaa
ggcatcgatgcgagtagtgtctactgcaaccacgtactggtcgtggagcaggtcctaggt
atcgaggcagcgcgaagcaccatcgtgaaggaggtgctggagaccatggctgcgcacggg
gtaacgcttgatgctcgtcatgtggacctgctctccgacatgatgacccagagtgggcaa
gtgcttggcatcacgcgctttggaatcagcaagatgcgtcagagtaccctgatgctggcg
agttttgagaagaccgtggatcatctctttgaggctgcggttcgttcacgttctgatcgg
attcgaggagtcagtgagcgggtgattatgggaaagccagtgccactgggcaccggcatg
gtgtcagtcggctatgtcgagtgtcctgaacgcgtcgcactcgctccgcaacgcgatgcg
acttgttccgggtcggaggaggcggtttcgtctagtttggagggtacgtcaaggtcaaga
tctaggccagaggcgatacaaagtgctgacgacgaggcgccacgagacgtagatcgccca
gcaacagagcgaggagtagataggatcacaaacggaacaacaacagcagtagcagcagca
gcagcaggaggagatgcagacgaaacgtttgccgccatgccgttcccaaaccagaagcga
cttgcctggcatttgttgcgaccgcccgaggcagcgacctggtcgagaaattgcaacagg
cgtgaaaaggcaaccatcgttcacgagcagtga
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integrated database retrieval system
