KEGG   Cyanidioschyzon merolae: CYME_CMH020C
Entry
CYME_CMH020C      CDS       T00175                                 
Name
(RefSeq) cleavage and polyadenylation specifity factor protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CYME_CMH020C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cme03021]
    CYME_CMH020C
   03019 Messenger RNA biogenesis [BR:cme03019]
    CYME_CMH020C
Transcription machinery [BR:cme03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CYME_CMH020C
Messenger RNA biogenesis [BR:cme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CYME_CMH020C
    U7-dependent histone pre-mRNA processing factors
     CYME_CMH020C
SSDB
Motif
Pfam: Beta-Casp CPSF73-100_C Lactamase_B_6 Lactamase_B RMMBL Lactamase_B_2 Lactamase_B_3 Beta_lactamase3 Anti-Pycsar_Apyc1 ODP
Other DBs
NCBI-GeneID: 16993357
NCBI-ProteinID: XP_005536011
UniProt: M1V4X0
LinkDB
Position
8:complement(57784..60033)
AA seq 749 aa
MPPATDDDTLSIIPLGAGSEVGRSCIVLKFKKKTILFDCGVHPAYSGLAALPFFDEIDPS
EIDVILITHFHLDHCAGLPYLVTQTNLNPRARILMTHPTKAVYRSLIGDFVRVGSSDYAG
IIYTESDLNQTMARIECIDYHQHIDVSGVRISAYNAGHVLGAAMFLVEVAGVSVLYTGDF
SRQEDRHLMEAEIPRGIHIDVLICESTYGVQVHEPRRVREARFTQRVAEVVKRGGRCLLP
VFALGRAQELLLILEEYWDAHPELQEIPIYYSSSIAKRCMAIYSTYIHQMNQNIQQRYRR
FGNPFAFKYVMNIRSLDEFEDSGPCVFMASPGMLQSGMSRRLFEKWCSDRRNGVILPGYS
VQGTLAKYILTDPATVPRLDGQHVPLRCSVDYITFSAHSDFMQTSEFIEQCRPSNLVLVH
GEKSEMQRLAQALDSRFNRKATFEAAIAEASAVQVGSNEKDVYEPDVDVLPSNLAPLSGV
TTGSVRDTMRVKDANQDDSKRLRIFTPRNTKAVLLRFQGEVIGKAIGKFAKSRPEAGHRA
SGVLLKRDYKYSLLEPSDLEQYTAMKTSRILQRLVAPFCLGGGIESFEEELRGMFSKVVT
EDTECGSEERVFLVQGAVHVRISGTEPKTGYRFLTFEWDSSFQADAIVDALIAFLADRSV
HEPPKGYPDQDALRELRLTRRLLAERFGSVEVTGRSETRLVIENTPVIVNHETGEVTCKD
TKLRDHIYIVLRRIYSSIYPIPDWFCGCS
NT seq 2250 nt   +upstreamnt  +downstreamnt
atgccacccgcgacagacgatgacacgctctctattataccgttaggtgcaggatccgag
gtgggacgatcttgtatagtgctgaagtttaaaaagaaaacgattctctttgactgtggc
gtgcatcccgcgtactccggacttgctgctctgccgtttttcgacgagatcgatcccagt
gagattgatgtgatcctaataacccactttcatctggatcactgtgctggtctgccgtac
ctcgtcacgcaaacgaatctaaacccgcgtgcgaggattcttatgacgcatccgacgaaa
gcagtgtatcgctctctgataggtgattttgttcgcgtgggctcgtcggactacgctggt
ataatttacacagagtccgacctcaaccagacaatggcacgtatcgaatgcatcgattat
catcagcatatcgatgtctctggtgtgcgcataagcgcgtacaacgccgggcacgtgctc
ggcgccgcgatgttcctcgtggaggtcgccggtgtttcagttctgtacacaggagacttc
tcacgacaggaggaccgccacttgatggaagcagagataccgcgaggcattcacatcgat
gtgttgatttgtgagtcgacatacggcgtgcaggttcacgaaccgcgacgagtccgggag
gcacgcttcacgcaacgggttgcagaagttgtgaagcgcggaggtcgatgcctcttaccc
gtatttgcgctcggtcgggctcaagagctgttgctcatcctggaggaatactgggacgcc
catccggaattgcaagagattccgatttattattcgtcatcaatcgcgaagcgttgtatg
gccatctactccacgtatatccatcagatgaaccagaatattcagcaacgctaccggaga
ttcggtaatccttttgccttcaagtatgtgatgaacattagatcgctggatgaattcgag
gattccgggccctgtgtattcatggcatcacccgggatgttgcagtccggcatgagtcgt
cgcctcttcgagaagtggtgtagcgacagacggaatggcgtcattctgcccggatactct
gtgcagggcacccttgcaaagtacattctgacggatccggcgacagtaccccggcttgat
ggacaacatgttccattgcgatgctctgtggactatataaccttctctgctcattcggat
ttcatgcagacgagcgagttcatcgagcagtgccggccatcgaatctggtcctcgttcac
ggggagaaatctgaaatgcagcggttggcacaagcgctagatagccggttcaatcgcaaa
gcaacctttgaggccgccattgcggaggcctctgctgtccaggtggggtcgaatgagaaa
gacgtatacgagccagatgttgatgtacttccgagcaacctggcgccgctttcgggggtc
acgactggtagtgtccgcgacacaatgcgtgtcaaagatgcgaaccaagacgattcaaag
cgtcttcggatttttacacctcgaaatacgaaagccgttctattacgattccagggtgag
gtcattggaaaggcaatcggcaaatttgcgaagagccgcccagaagctggacaccgcgca
tcgggcgttttattgaaacgggactataagtactctctgctggaaccttcggatttggag
caatacacagcgatgaaaacatcacggattctgcaaagactcgtggcaccgttttgtctc
ggaggaggtatcgagagctttgaagaggaactgcggggtatgttttccaaggtcgtgacc
gaagacaccgagtgcggctctgaagaacgagtctttcttgtccagggtgccgtccatgtt
cgtatatctgggacagagccaaaaactgggtatcggttcctcacattcgagtgggattcg
tcattccaggctgacgccattgtggacgccttgatcgccttcctagctgatcgttctgtt
catgagcctccaaagggttatccagatcaggatgcattgcgtgagcttcgtcttacgcgg
cggctgcttgccgaacgattcggttccgtagaagtaacgggaaggagcgagacgcgattg
gtcatcgaaaacacgccagtgatcgtgaaccacgagaccggtgaagtcacttgcaaggac
acgaaactacgggaccacatttatatcgttcttcggcgcatctattcgtctatctatccg
attccagactggttttgtgggtgctcttga

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