Cyanidioschyzon merolae: CYME_CMH020C
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Entry
CYME_CMH020C CDS
T00175
Name
(RefSeq) cleavage and polyadenylation specifity factor protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMH020C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMH020C
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMH020C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CYME_CMH020C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CYME_CMH020C
U7-dependent histone pre-mRNA processing factors
CYME_CMH020C
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-Casp
CPSF73-100_C
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
16993357
NCBI-ProteinID:
XP_005536011
UniProt:
M1V4X0
LinkDB
All DBs
Position
8:complement(57784..60033)
Genome browser
AA seq
749 aa
AA seq
DB search
MPPATDDDTLSIIPLGAGSEVGRSCIVLKFKKKTILFDCGVHPAYSGLAALPFFDEIDPS
EIDVILITHFHLDHCAGLPYLVTQTNLNPRARILMTHPTKAVYRSLIGDFVRVGSSDYAG
IIYTESDLNQTMARIECIDYHQHIDVSGVRISAYNAGHVLGAAMFLVEVAGVSVLYTGDF
SRQEDRHLMEAEIPRGIHIDVLICESTYGVQVHEPRRVREARFTQRVAEVVKRGGRCLLP
VFALGRAQELLLILEEYWDAHPELQEIPIYYSSSIAKRCMAIYSTYIHQMNQNIQQRYRR
FGNPFAFKYVMNIRSLDEFEDSGPCVFMASPGMLQSGMSRRLFEKWCSDRRNGVILPGYS
VQGTLAKYILTDPATVPRLDGQHVPLRCSVDYITFSAHSDFMQTSEFIEQCRPSNLVLVH
GEKSEMQRLAQALDSRFNRKATFEAAIAEASAVQVGSNEKDVYEPDVDVLPSNLAPLSGV
TTGSVRDTMRVKDANQDDSKRLRIFTPRNTKAVLLRFQGEVIGKAIGKFAKSRPEAGHRA
SGVLLKRDYKYSLLEPSDLEQYTAMKTSRILQRLVAPFCLGGGIESFEEELRGMFSKVVT
EDTECGSEERVFLVQGAVHVRISGTEPKTGYRFLTFEWDSSFQADAIVDALIAFLADRSV
HEPPKGYPDQDALRELRLTRRLLAERFGSVEVTGRSETRLVIENTPVIVNHETGEVTCKD
TKLRDHIYIVLRRIYSSIYPIPDWFCGCS
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgccacccgcgacagacgatgacacgctctctattataccgttaggtgcaggatccgag
gtgggacgatcttgtatagtgctgaagtttaaaaagaaaacgattctctttgactgtggc
gtgcatcccgcgtactccggacttgctgctctgccgtttttcgacgagatcgatcccagt
gagattgatgtgatcctaataacccactttcatctggatcactgtgctggtctgccgtac
ctcgtcacgcaaacgaatctaaacccgcgtgcgaggattcttatgacgcatccgacgaaa
gcagtgtatcgctctctgataggtgattttgttcgcgtgggctcgtcggactacgctggt
ataatttacacagagtccgacctcaaccagacaatggcacgtatcgaatgcatcgattat
catcagcatatcgatgtctctggtgtgcgcataagcgcgtacaacgccgggcacgtgctc
ggcgccgcgatgttcctcgtggaggtcgccggtgtttcagttctgtacacaggagacttc
tcacgacaggaggaccgccacttgatggaagcagagataccgcgaggcattcacatcgat
gtgttgatttgtgagtcgacatacggcgtgcaggttcacgaaccgcgacgagtccgggag
gcacgcttcacgcaacgggttgcagaagttgtgaagcgcggaggtcgatgcctcttaccc
gtatttgcgctcggtcgggctcaagagctgttgctcatcctggaggaatactgggacgcc
catccggaattgcaagagattccgatttattattcgtcatcaatcgcgaagcgttgtatg
gccatctactccacgtatatccatcagatgaaccagaatattcagcaacgctaccggaga
ttcggtaatccttttgccttcaagtatgtgatgaacattagatcgctggatgaattcgag
gattccgggccctgtgtattcatggcatcacccgggatgttgcagtccggcatgagtcgt
cgcctcttcgagaagtggtgtagcgacagacggaatggcgtcattctgcccggatactct
gtgcagggcacccttgcaaagtacattctgacggatccggcgacagtaccccggcttgat
ggacaacatgttccattgcgatgctctgtggactatataaccttctctgctcattcggat
ttcatgcagacgagcgagttcatcgagcagtgccggccatcgaatctggtcctcgttcac
ggggagaaatctgaaatgcagcggttggcacaagcgctagatagccggttcaatcgcaaa
gcaacctttgaggccgccattgcggaggcctctgctgtccaggtggggtcgaatgagaaa
gacgtatacgagccagatgttgatgtacttccgagcaacctggcgccgctttcgggggtc
acgactggtagtgtccgcgacacaatgcgtgtcaaagatgcgaaccaagacgattcaaag
cgtcttcggatttttacacctcgaaatacgaaagccgttctattacgattccagggtgag
gtcattggaaaggcaatcggcaaatttgcgaagagccgcccagaagctggacaccgcgca
tcgggcgttttattgaaacgggactataagtactctctgctggaaccttcggatttggag
caatacacagcgatgaaaacatcacggattctgcaaagactcgtggcaccgttttgtctc
ggaggaggtatcgagagctttgaagaggaactgcggggtatgttttccaaggtcgtgacc
gaagacaccgagtgcggctctgaagaacgagtctttcttgtccagggtgccgtccatgtt
cgtatatctgggacagagccaaaaactgggtatcggttcctcacattcgagtgggattcg
tcattccaggctgacgccattgtggacgccttgatcgccttcctagctgatcgttctgtt
catgagcctccaaagggttatccagatcaggatgcattgcgtgagcttcgtcttacgcgg
cggctgcttgccgaacgattcggttccgtagaagtaacgggaaggagcgagacgcgattg
gtcatcgaaaacacgccagtgatcgtgaaccacgagaccggtgaagtcacttgcaaggac
acgaaactacgggaccacatttatatcgttcttcggcgcatctattcgtctatctatccg
attccagactggttttgtgggtgctcttga
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