Entry |
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Name |
(RefSeq) cleavage and polyadenylation specifity factor protein
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KO |
K14403 | cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] |
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Organism |
cme Cyanidioschyzon merolae
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:cme00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CYME_CMH020C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cme03021]
CYME_CMH020C
03019 Messenger RNA biogenesis [BR:cme03019]
CYME_CMH020C
Transcription machinery [BR:cme03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CYME_CMH020C
Messenger RNA biogenesis [BR:cme03019]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CYME_CMH020C
U7-dependent histone pre-mRNA processing factors
CYME_CMH020C
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
8:complement(57784..60033)
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AA seq |
749 aa
MPPATDDDTLSIIPLGAGSEVGRSCIVLKFKKKTILFDCGVHPAYSGLAALPFFDEIDPS
EIDVILITHFHLDHCAGLPYLVTQTNLNPRARILMTHPTKAVYRSLIGDFVRVGSSDYAG
IIYTESDLNQTMARIECIDYHQHIDVSGVRISAYNAGHVLGAAMFLVEVAGVSVLYTGDF
SRQEDRHLMEAEIPRGIHIDVLICESTYGVQVHEPRRVREARFTQRVAEVVKRGGRCLLP
VFALGRAQELLLILEEYWDAHPELQEIPIYYSSSIAKRCMAIYSTYIHQMNQNIQQRYRR
FGNPFAFKYVMNIRSLDEFEDSGPCVFMASPGMLQSGMSRRLFEKWCSDRRNGVILPGYS
VQGTLAKYILTDPATVPRLDGQHVPLRCSVDYITFSAHSDFMQTSEFIEQCRPSNLVLVH
GEKSEMQRLAQALDSRFNRKATFEAAIAEASAVQVGSNEKDVYEPDVDVLPSNLAPLSGV
TTGSVRDTMRVKDANQDDSKRLRIFTPRNTKAVLLRFQGEVIGKAIGKFAKSRPEAGHRA
SGVLLKRDYKYSLLEPSDLEQYTAMKTSRILQRLVAPFCLGGGIESFEEELRGMFSKVVT
EDTECGSEERVFLVQGAVHVRISGTEPKTGYRFLTFEWDSSFQADAIVDALIAFLADRSV
HEPPKGYPDQDALRELRLTRRLLAERFGSVEVTGRSETRLVIENTPVIVNHETGEVTCKD
TKLRDHIYIVLRRIYSSIYPIPDWFCGCS |
NT seq |
2250 nt +upstreamnt +downstreamnt
atgccacccgcgacagacgatgacacgctctctattataccgttaggtgcaggatccgag
gtgggacgatcttgtatagtgctgaagtttaaaaagaaaacgattctctttgactgtggc
gtgcatcccgcgtactccggacttgctgctctgccgtttttcgacgagatcgatcccagt
gagattgatgtgatcctaataacccactttcatctggatcactgtgctggtctgccgtac
ctcgtcacgcaaacgaatctaaacccgcgtgcgaggattcttatgacgcatccgacgaaa
gcagtgtatcgctctctgataggtgattttgttcgcgtgggctcgtcggactacgctggt
ataatttacacagagtccgacctcaaccagacaatggcacgtatcgaatgcatcgattat
catcagcatatcgatgtctctggtgtgcgcataagcgcgtacaacgccgggcacgtgctc
ggcgccgcgatgttcctcgtggaggtcgccggtgtttcagttctgtacacaggagacttc
tcacgacaggaggaccgccacttgatggaagcagagataccgcgaggcattcacatcgat
gtgttgatttgtgagtcgacatacggcgtgcaggttcacgaaccgcgacgagtccgggag
gcacgcttcacgcaacgggttgcagaagttgtgaagcgcggaggtcgatgcctcttaccc
gtatttgcgctcggtcgggctcaagagctgttgctcatcctggaggaatactgggacgcc
catccggaattgcaagagattccgatttattattcgtcatcaatcgcgaagcgttgtatg
gccatctactccacgtatatccatcagatgaaccagaatattcagcaacgctaccggaga
ttcggtaatccttttgccttcaagtatgtgatgaacattagatcgctggatgaattcgag
gattccgggccctgtgtattcatggcatcacccgggatgttgcagtccggcatgagtcgt
cgcctcttcgagaagtggtgtagcgacagacggaatggcgtcattctgcccggatactct
gtgcagggcacccttgcaaagtacattctgacggatccggcgacagtaccccggcttgat
ggacaacatgttccattgcgatgctctgtggactatataaccttctctgctcattcggat
ttcatgcagacgagcgagttcatcgagcagtgccggccatcgaatctggtcctcgttcac
ggggagaaatctgaaatgcagcggttggcacaagcgctagatagccggttcaatcgcaaa
gcaacctttgaggccgccattgcggaggcctctgctgtccaggtggggtcgaatgagaaa
gacgtatacgagccagatgttgatgtacttccgagcaacctggcgccgctttcgggggtc
acgactggtagtgtccgcgacacaatgcgtgtcaaagatgcgaaccaagacgattcaaag
cgtcttcggatttttacacctcgaaatacgaaagccgttctattacgattccagggtgag
gtcattggaaaggcaatcggcaaatttgcgaagagccgcccagaagctggacaccgcgca
tcgggcgttttattgaaacgggactataagtactctctgctggaaccttcggatttggag
caatacacagcgatgaaaacatcacggattctgcaaagactcgtggcaccgttttgtctc
ggaggaggtatcgagagctttgaagaggaactgcggggtatgttttccaaggtcgtgacc
gaagacaccgagtgcggctctgaagaacgagtctttcttgtccagggtgccgtccatgtt
cgtatatctgggacagagccaaaaactgggtatcggttcctcacattcgagtgggattcg
tcattccaggctgacgccattgtggacgccttgatcgccttcctagctgatcgttctgtt
catgagcctccaaagggttatccagatcaggatgcattgcgtgagcttcgtcttacgcgg
cggctgcttgccgaacgattcggttccgtagaagtaacgggaaggagcgagacgcgattg
gtcatcgaaaacacgccagtgatcgtgaaccacgagaccggtgaagtcacttgcaaggac
acgaaactacgggaccacatttatatcgttcttcggcgcatctattcgtctatctatccg
attccagactggttttgtgggtgctcttga |