KEGG   Cyanidioschyzon merolae: CYME_CMH034C
Entry
CYME_CMH034C      CDS       T00175                                 
Name
(RefSeq) probable DNA repair endonuclease XPF
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03420  Nucleotide excision repair
cme03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CYME_CMH034C
   03460 Fanconi anemia pathway
    CYME_CMH034C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cme03032]
    CYME_CMH034C
   03400 DNA repair and recombination proteins [BR:cme03400]
    CYME_CMH034C
DNA replication proteins [BR:cme03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    CYME_CMH034C
DNA repair and recombination proteins [BR:cme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     CYME_CMH034C
SSDB
Motif
Pfam: ERCC4 HHH_5
Other DBs
NCBI-GeneID: 16993369
NCBI-ProteinID: XP_005536022
UniProt: M1UQE4
LinkDB
Position
8:98387..101425
AA seq 1012 aa
MLHYEKTAAAEILRGGNSLAVFSRGLDLGSLVAIVAAEKLLLSEGRPILALNFPKTVFQR
LGRLLATHPAKFPIHLLPRHVSSSVSAVERFEVYGCGGIIAATPRTLAVDLLTAVSQLGD
HGAKKVPTLSFLGILIYNAHEISEHRSETFVTRLFREYVGRCELEDTFIHAFSDAAPALC
RGFHSAEKLMRLLGLERLLLYPRFHVDVVTSLEHKTENPQSYVDGGYGTHSSSSAGIELL
ELHQPMTALMKAIQDEILVLMRSCFFELRRSSPAAELDESDLRVAATSRSILQAAQRIGQ
EWRRLNSRSRQLLQDIQNLNSILSSLLDDDCVTFLAYLESLRDTQGATSLWMAMESAQNL
YRLARERVFRGTDTGGDSKLMGMQDAALDLRASETGELPFEFSQKLVCPEPNSKWELLKE
LLDEVVSMLMGHQRHGNVSDASTRRVLVLGREPCTIQFLAEYLHYREGAFDALHRRLLLY
LGTKSGGKARESVRPTTATMSKAVPSLRVKSDAIDASQSSSNAESEHSSACTDMRQHAPN
QRITAEHDSPGQKFGHLQGDAAGHASPRESASDNYNSAPAHASSAVSQCADAARVEILLK
SYGRRQSSTGVENLIGPSTILPFLLDSQPCSIIMLDPTLQHVREIEVYQAAYSRFAKIRV
YAVFYEESPEYELYCNAIADEKHAFQTLIRHKASMAVRLDQSSAVAVPDTGPERIYWPLW
AGSLAKADRPSPSSGRPQILVDVREFRSTLPGCLYQAGFELLPRTLKVGDYVLTPDICVE
RKSIPDLTSSLASGRLYTQCQAMCRLYRYPLLMIELQEDDIGSTGAKAHVTNLFAPSLSF
QENSSHGPATGIGKLCLLTIHFPRLRLLWCRGPQAGAEVFGTLKIGEAEPSGEPTGQISG
ESEATEDSSAEASLYSVMNARDAFAMRPFDMLRCLPGVENATVFALMRQFRTLTDLANAE
ADNMAKHFGPTLAKQLISFINTEFRDPNEVSASAAGAEPVSKKIRSTSPADL
NT seq 3039 nt   +upstreamnt  +downstreamnt
atgcttcactatgaaaagactgcagcggcggagattctgagaggcggtaacagcctggca
gtgttcagtcgcggcctagacttaggttctctcgttgccatcgttgcagcggaaaagctt
ctgctaagcgaagggagacctattttggcactcaacttcccgaaaactgtttttcagcga
cttggccgtctgctagcgacgcaccctgcaaaattcccgatccacctgctcccaagacat
gtgagttccagcgtttcagcggttgaacgcttcgaagtctacggatgtggaggaatcatc
gctgccacaccgcgaactttggctgtggaccttcttacagcagtatctcagctgggtgat
cacggggcaaaaaaagtccccacgctgagttttctgggtattctgatttataacgcacat
gaaatctcagaacatcgaagcgaaacttttgtaacgcgtctttttagagaatacgtagga
agatgtgaactggaggataccttcatacacgcctttagtgacgcggcaccagcattgtgc
cgcggatttcactcagcagaaaaactgatgcgccttctcggactcgaaaggttactgctt
tatcctcgttttcacgttgatgtcgttacctcccttgagcacaagacagaaaatccacag
agctacgtagatggaggttatgggactcattcctcatcgagcgcgggaatagagttgctg
gaattgcatcagcctatgactgcactgatgaaagccattcaggacgagatccttgtgctc
atgcgatcctgctttttcgaattaagacgcagttcgccggccgcggaactagatgagagt
gatttgagggtagcggctaccagtaggagcatcttacaagccgcccagcgcatcgggcaa
gaatggcggcgattgaattctcgtagcaggcagctgttgcaggatatccagaacctgaat
agcattctttcgagtctgctggacgatgactgtgtcacatttttggcatatttagagtca
ttgagggatacacaaggagcgaccagtttgtggatggcgatggaatcggcgcaaaatctg
tatagactggccagggagagagtcttccgaggcaccgacactgggggagactccaaacta
atgggaatgcaggatgcagcgcttgacctacgagccagcgagactggtgagttaccgttc
gaattcagccagaagcttgtctgtccggaaccgaacagcaaatgggaacttttgaaagag
ttacttgatgaagttgtaagtatgctcatgggtcatcagaggcatggaaacgtatcggac
gcatcgactcgtcgagttcttgttctggggagagagccctgcactattcagtttctcgcc
gagtatctccactatcgtgaaggcgctttcgacgcattgcatcgacgactgcttttgtat
cttgggacgaaatccggtggaaaagcccgtgagtctgtcagaccgacgacggcaacaatg
tcgaaagcggtgccgtcacttagggtcaagtcagatgccatagatgcctcgcaatcctcg
tcgaacgcggaaagtgagcactcgagcgcttgtactgatatgcgacaacacgcaccaaat
cagaggatcacagcagaacacgattcccctgggcagaaattcggtcacctacagggcgat
gccgcagggcatgcatccccccgcgaatcagcgtcggataactacaattcagctcccgcg
catgccagtagtgccgtgtcgcagtgtgcagatgcagcgcgtgtagagattttgctcaaa
tcctatggcaggagacagagcagcacgggcgttgaaaacctcatcggaccctccaccata
ctgcctttcttgctggattcgcaaccgtgttcaattattatgttggatcctaccctgcaa
cacgtccgagaaatcgaagtataccaagccgcttactcgagatttgcaaagatccgggtc
tatgcagtattttacgaagaatcccccgaatatgagctatattgtaatgcaatagcagat
gagaagcacgcatttcaaaccttgatccgccataaggcgtcgatggccgttcgactcgat
cagagctctgccgtggctgtaccggatactgggcccgaacgcatttattggccactttgg
gcgggatcccttgcgaaggcggatagaccttcgccctcgtctggacgtccccagattctt
gtggatgtacgagaatttcgctcgacgcttcctggttgtctgtatcaagcgggattcgag
ctgcttcctcggaccctgaaagtaggggattatgtactcacaccggatatttgtgtcgag
cgcaaaagtatcccggatctgacgagttctttggcgtctgggagactttatacgcaatgc
caagcaatgtgtcgactatatagatacccgttgctgatgatcgagctccaggaagatgac
atcgggagcacgggagcgaaagcacatgtgacaaatctgttcgcgcctagtctctccttt
caggagaattcctcgcatggtcctgccacgggaatcgggaaactgtgcctactgacaatt
cattttcctcgtctacgcctactgtggtgtcgaggtccccaagcaggtgccgaagtgttt
ggcacattaaaaattggggaagcggaaccgtcgggtgaaccgacgggccagatttcaggc
gaatccgaagcgaccgaggactcatccgcagaagcttcactttattcggtgatgaatgca
cgagacgctttcgctatgcgtccttttgacatgcttcgttgtctgcctggcgtcgagaat
gcaactgtgtttgcgctcatgcgccagtttcgaacgctgacggatctggcgaacgctgaa
gctgataatatggcgaagcatttcgggccgactcttgcaaagcagctcatctccttcatc
aacacggagtttcgtgatccgaatgaggtttctgcatcggctgccggagctgaaccagtt
agcaaaaaaattcggtctacgtcaccggccgacttgtag

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