Cyanidioschyzon merolae: CYME_CMI209C
Help
Entry
CYME_CMI209C CDS
T00175
Name
(RefSeq) TATA-box binding protein-associated factor 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CYME_CMI209C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cme03021
]
CYME_CMI209C
03036 Chromosome and associated proteins [BR:
cme03036
]
CYME_CMI209C
Transcription machinery [BR:
cme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
CYME_CMI209C
Coactivators
SAGA/TFTC/STAGA complex
CYME_CMI209C
Chromosome and associated proteins [BR:
cme03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
CYME_CMI209C
STAGA complex
CYME_CMI209C
TFTC complex
CYME_CMI209C
SAGA complex
CYME_CMI209C
SLIK complex
CYME_CMI209C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
eIF2A
Beta-prop_VPS8
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
16993651
NCBI-ProteinID:
XP_005536366
UniProt:
M1V555
LinkDB
All DBs
Position
9:561738..563774
Genome browser
AA seq
678 aa
AA seq
DB search
MSGAEQAASELLRSRGVDVDGQRRGRQNGDDSARNIFFFIENQGHRADPVAVSEQYRSLR
SWVENALDMYKGELVSVLYPLLVHSFLDLVEQGHQEAAESFLRRFGSEFQDRGHRDELIA
LSSVSLPEHIGQNEVARLFRENRYQLQFSAYGWQLLVSFLRDSGGFFFLRILNEHTRVQI
ETVGTDPLADAAGVTVDAKATDGFVGANERTSLLRIPVQWGLLRESDYVTEDTEIDIDRA
YLERMARERDAERAVADTTGSTAAAETKPGPAPSGKTPGSERDKASTGRKSGARAAAMSS
RGADGTGKTSDASGGFLDMSQSIPVPRIWRSSGMLPSLEDLRKRVQVSANALPSVLFYTL
LNSHGLVNAMDISNDGSLLVTGCDDSVLRLYKVRQELQNTSESDKDRGTNLSGEIPSLSV
SQVLVGHAGPVYAVHTSADGRYCISSSEDGTVRLWDLQLGTDLVAYPCHESPIWDVRFAP
LGRYFVTASHDRTARLFCTDRLSPLRLFAGHMTDVDCVSWHPNCNYVATGSSDRSCRLWD
CRTGDCTRIFLGHRAPLTALAFSPNGRLLATADFNGTILLNDIAEGRLLKRFSEHTDAVW
CLDFSQGDGSILASGAGDNSIRLWPVLTNTLDASGSSVDAVHDSSSLRVMRTKSTPVLGL
RFSWRNLLLAGGSFRALT
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcgccgagcaagcagccagcgagctgcttcggagccgtggcgtcgatgtcgac
ggccagcgaagaggaaggcaaaacggagacgattctgcgagaaacatcttctttttcatc
gagaaccagggacatcgtgctgatccagtagcagttagtgaacagtatcggtcgcttcgc
agctgggtggagaacgcactggacatgtacaagggcgagctcgtaagtgtcttgtatccg
ctgctggtgcatagcttcctggacctggtcgagcaaggacaccaggaagctgcggagagt
tttcttaggcgcttcggcagtgagtttcaggatcgtggacatcgtgacgagcttattgcg
ctctccagcgtctccctaccggagcatatcggccagaatgaagtggctcgcctgtttcgg
gagaacaggtatcagctgcagttttctgcctatggatggcagctcttggtgtctttccta
cgagactcgggaggcttctttttcctgcgcatactcaacgagcacacccgcgttcagatc
gaaaccgtcggcacagatccactagcggatgctgccggggtcacggtggatgccaaagca
acggacggctttgtgggggcaaacgagcgcacgtcactgctgcgcattcccgtgcaatgg
ggcctcctccgtgaatcagactacgtcactgaggataccgaaattgacatcgatcgcgcc
tacttggagcgaatggctcgcgagcgcgatgcggagcgtgcggtggcggatacaaccggc
tccacggcggccgccgaaaccaaaccgggccctgcgccttcggggaagactcccggaagc
gaacgagacaaagcatcgaccggccgcaagagcggtgctagagcagccgcgatgtccagc
cgcggagcggacggcaccggaaagacctccgacgcgagcggcggatttctagacatgtcg
cagtcgataccggtgcctagaatttggcgctcctctgggatgttaccgtcactggaggac
ctgcgaaagcgtgttcaagtgtcagcaaacgcgctcccatcggtgctcttctacacgctc
ctgaactcccatgggttggtgaatgcgatggatatttcgaacgatggctctctgctcgtc
actggctgcgatgactccgttctgagactctacaaggttcgacaggagcttcagaataca
agcgagtcggacaaggaccgcggaaccaatctttctggagagattccctcgctttccgtt
tcgcaggtcctggtgggccacgctggccctgtctacgcggtccatacctccgctgacggg
cgctactgcatatcgagctccgaggacggcaccgttcgcctatgggatcttcagctcggc
acagacctcgtagcgtacccctgccacgaatcaccgatatgggatgttcggttcgcgcct
ctgggaagatattttgtgactgcctcacacgatcgcactgcgcgtctgttttgtacggat
cgactgtcaccgcttcgtttgtttgccgggcatatgaccgatgtagactgcgtcagctgg
catcctaactgtaactatgtggcaacaggttcaagtgatcgtagttgtcgtttatgggac
tgtcgaacgggcgactgcacgcggatcttcttgggccatagggcgccgctgacggcgttg
gcgttctctccaaacggtcgtcttctggcgacagcggatttcaatggcacgattttgctc
aacgatatcgctgagggtcgccttcttaagcgattctctgagcataccgatgccgtttgg
tgcttagacttttcgcaaggcgatggttcgatactggccagtggcgctggtgataactcc
attcggctgtggccggtgcttacaaatacgctggacgcttcgggttcttccgtagatgct
gtgcatgattcaagttcgttgcgcgtgatgcgaacaaagagcacgccggtgttgggtctg
cgcttttcatggcgcaatttgttgcttgcaggtggctcgtttcgtgcgttgacctag
DBGET
integrated database retrieval system
