Cyanidioschyzon merolae: CYME_CMI252C
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Entry
CYME_CMI252C CDS
T00175
Name
(RefSeq) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cme
Cyanidioschyzon merolae
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cme03032
]
CYME_CMI252C
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMI252C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CYME_CMI252C
DNA replication proteins [BR:
cme03032
]
Prokaryotic type
DNA Topoisomerases
CYME_CMI252C
DNA repair and recombination proteins [BR:
cme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CYME_CMI252C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
AvrE_T3Es
Toprim_2
Motif
Other DBs
NCBI-GeneID:
16993696
NCBI-ProteinID:
XP_005536404
UniProt:
M1VH35
LinkDB
All DBs
Position
9:671506..674778
Genome browser
AA seq
1090 aa
AA seq
DB search
MWVGGAWPTPLDSVTRVLPACWRLHAAAKWKPSFHRQVTVPSRGYAPQIRELSSSRTEAL
RRSIPLRAQLEPESNERGSKPTAAKRAPRTSRRKVTGLKAARSSKTAVAKATAQSDGVQH
STEAAERSPLDNEAAVGNRKALVIVESPAKARTIQKFLPPNYIVESCMGHVRDLPQTARQ
VPAELKEHAWARLGVDVEDSFRPLYVVPENRRETVERLREQLTQANELVLATDEDREGEA
ISWHLVELLQPQVPVRRAVFHEITEDAIQEAFQSFRDIDMNLVHAQETRRILDRLAGYTL
SPLLWKKIAPGLSAGRVQSVALAMIVERELERLRFRSAQYWSILAQLRIEHVQGTESPIL
EAELVRIGEARLAIGKDFDGRTGKLREDVQSENTNGRVKVIWLDEPTANRLAAEAQSAPP
GSFRIVSIERRQVTRTPPLAFTTSTLQQEASRRLRVTTLQVMRAAQSLYEGGYITYMRTD
SPQLSMQATEAARRAAAERFGAEQAVPAQAAPRKTSKKPKGAQEAHEAIRPAGRAFTPPE
ALSLEPLEKRLYELIYYRTLASEMQPAKLRQTTLTIEGPKEMLFRASGTEVEFPGWLLAY
EALRRVHEHVSESGSAASVNEDSALDEQGLLPRDVHLSEGDSLTAVAVDPVLHETKAPAR
YTEASLVKELETNGVGRPSTYVSIIETLLERSYVIRKGSSGSASSLVPTLTAFVVVRFLQ
HHFPNFVDVRFTSEMEAALDLIARGEADRIAYLQQYYCGESGLAAAVRAKSDTIDVNEAR
RVYLPALEGDAAAPEVTGEAKTTAADGERKEWPKPLVYVGPYGPYVVYGEKVSLPREISA
EQVTLDTLRRLAEQRKCAAELGVDPQTGMHVYLRTGPYGPYVQLGEDPGSMASHTSTEKS
AAPSTDDAAPTDKQLDSAREASPGTSARSTRRARGTGTSARAPHEKPKRVSLPSWLDPAR
VDLELALRLLSLPRIVGEHPATGEIIRAGYGRLGPYLLYQDKFTSLSKYEPGGASDPLFI
DLETAVHILDTAKTSKSRSRSTKSKTSDAAEEANGASSESADAAPTENDQLKAPPRRGTA
PRTRSRKTSG
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtaggaggtgcgtggccgacacccctcgatagcgtaacgcgggtgttacccgcg
tgctggcgcctgcacgctgccgcaaagtggaaaccttcctttcacagacaggtgacggtg
ccatcgaggggttacgcaccgcaaatcagagagctgagttcaagtagaactgaggcattg
cggcgtagcataccactgcgagcgcagcttgagcccgagagcaacgagcgaggctcgaag
ccaactgcagcgaaacgagcacctcgcacgagtcgtcgaaaggtgactgggctcaaggct
gcacgttcgagcaaaaccgcagttgcgaaagcgaccgcccagagcgatggagtgcagcac
tccaccgaggcggctgaacgctcgccgttggacaacgaggccgcagttggaaaccgcaag
gcgctagtcatcgtggagtctccggcaaaggcgagaacaatccaaaaatttctaccgccg
aattatattgtcgagtcatgtatgggtcacgtacgagatttgcctcagactgcacgccaa
gtacctgcagagctaaaggagcatgcatgggcgcgcctcggcgttgacgtagaggactct
ttccgtccgttgtatgtcgttccggagaaccgccgtgaaaccgtagagcgtttgcgagaa
cagctgacacaggcgaatgaactcgtgctcgcaactgacgaggaccgagagggtgaggcc
atctcgtggcatctggtggagctcctacaacctcaggtgcccgttcggcgcgcagttttc
catgaaattaccgaagacgctattcaagaagcctttcagagctttcgtgacattgacatg
aacctggtacacgcgcaggaaacccgaagaattctggatcgcctggccggttacaccctt
tcaccactgctgtggaagaagatcgcgccggggttgtcggctggccgggtccagtctgtc
gcacttgccatgattgtggagcgcgaactcgagcgactgcgctttcgctcagcccagtac
tggagcatcctggcccagcttcgtatcgagcacgtgcagggcaccgagtcaccgatcctg
gaagcagagcttgttcgcatcggggaagcacgcctcgctatcggcaaagatttcgatgga
cgtacgggcaaactcagagaggacgtgcaatctgagaacaccaatggccgtgtgaaagtg
atctggctcgatgaaccaactgcgaatagacttgcggcggaggcccagtctgcaccgccg
ggctcttttcggatcgtctcgatagagcgacgtcaggtaacgcgtacaccgcctctggcg
ttcacgacttcaaccctgcagcaggaggcctctcgacgcctccgcgtcaccacgcttcag
gtgatgcgcgctgcccagtctctctacgaaggtggctacataacgtacatgcgaacagac
tctccgcagttgtccatgcaggccacagaggctgcccgacgagcagcagcagagcgcttt
ggcgccgagcaggcagtccccgctcaagcggcgccacgcaaaacgtccaagaagccgaag
ggtgcccaggaagcgcacgaggccattcggccggccgggcgcgccttcacgcccccggaa
gccctgagcctggaacctctcgagaagcgcctctacgaactcatctactatcgtacgctg
gctagtgagatgcagccagcgaaactccgccaaacaacattgaccatcgaaggtccaaag
gagatgctgttccgggcgagcggcaccgaagtagaatttcctggttggctcttggcctac
gaagcacttcgccgcgtacacgagcatgtctccgaatctgggagcgctgcttccgttaac
gaggactctgcactcgatgagcagggattacttccgagagacgtgcacctttcggagggc
gacagcctcaccgcggtcgctgtggaccccgtcctgcacgagaccaaagcaccggcacgc
tacaccgaagcgtcgctggtcaaggagttggagacgaacggcgtggggcgacccagcacc
tacgtcagcattatcgaaacgctcctggagcgttcgtatgtgatccggaagggttcgtcc
ggttcggcatcgagtctggtgccaaccttaaccgcgtttgtggtcgtgcgcttcctccaa
catcatttccccaactttgtagacgttcgtttcacctccgaaatggaggctgcacttgac
ctcatcgccagaggtgaagccgaccgcatcgcctacctgcagcagtactactgtggcgag
tcggggctagcagctgcggtgcgggcgaaaagcgacacaatcgatgtcaacgaggcacga
cgagtctacctccctgcgctcgagggcgacgcagcggctccagaggtcacgggtgaagcg
aagaccaccgctgccgatggtgaacgaaaggagtggccgaaaccgctggtttatgtgggc
ccgtatggaccttacgttgtctacggcgagaaggtttcgttgccgcgggagatatcggcc
gagcaggtcaccctggacacgctgcgtcgtctggcggaacagcgcaagtgcgctgcagag
ctgggcgtggatccacagaccgggatgcacgtctacttacgaactggaccctatggccca
tacgttcagctgggcgaggaccccggctcgatggcaagtcacacttccacggaaaaatca
gcagcacccagtaccgatgacgcagcgcctaccgacaaacagctcgattccgcgagagaa
gcgtcgccaggtaccagtgcccgttcgacgagacgcgctcgaggaacgggtacgagtgcc
cgagctccccatgaaaagccgaagcgggtttcgttgccgtcgtggctggacccagcacga
gttgatctcgaacttgcgctgcgcctgctctccttgccgcggattgttggcgagcacccg
gcaactggcgaaatcattcgcgcaggctacggtcgtctgggtccgtatcttctctatcag
gacaagtttacgagcctgagcaagtacgaacctggaggcgcctctgacccgctgttcatt
gatctggaaacggcagttcatattctggacactgcgaaaacgtccaagtctagatccagg
tcgacgaaatcgaaaaccagcgatgccgctgaagaagcgaatggggcttcatcggagtct
gcggacgcagcacctacggaaaacgaccagctcaaggcaccgccaagacgcggaacagcg
cctcgaactcgctcccgcaaaacttccggttag
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