Cyanidioschyzon merolae: CYME_CMJ136C
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Entry
CYME_CMJ136C CDS
T00175
Name
(RefSeq) similar to poly(A)-binding protein dependent poly(A)-ribonuclease subunit
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CMJ136C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMJ136C
Enzymes [BR:
cme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CYME_CMJ136C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CYME_CMJ136C
mRNA degradation factors
3'-5' decay
Pan complex
CYME_CMJ136C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
UCH
RNase_T
Motif
Other DBs
NCBI-GeneID:
16994201
NCBI-ProteinID:
XP_005534872
UniProt:
M1V592
LinkDB
All DBs
Position
10:386036..389578
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AA seq
1180 aa
AA seq
DB search
MQPLHTPVEAPVFPGLGDPIRRTRWVSVPLTDPDTDALNGGSRPAPTPGTHGTRLVLVGT
QHGQVRTSVYPSGCLFTSWVGSVAGALSDGVRDVAAIQGASTESLLVSVSANGTLIRTTL
GLPLHTLTSSDWTQSRLCRPMPLQGHALLLVTTDLGRMHLLQAERGTALRSFVDPPHIRR
ALAADWLYNQAIVLGYDDGSIALKDPSSLRVLHEEPRHPAGNAARFPVVDLVALSEHGLV
AAVYGVVPLIRLYDIRKGLGNGGRVGKISPAIVQELAVPSSDSVIALKWLPGKQRLWTLG
VGGHCERFSVDGAASVLCYEAGLCLPVGNGLYSCFDITAEGGTLVTGDLGGCVQYLHLEE
SEKLEALANAQCPDPALSEPALIEALCSRAARNARPRRDLTDSTHTEQRCWLADTPWPLV
QQQRGNATKRLKFRFPLLASPIAIRSARFVGPVGYLPVTGSASDQLYLQPDEGWQQTSIS
TASMQPKLDTLEERVRFRRIDLVKAESLEGFDYALYNRTRFCGLENSLPTMYMNPILQMF
FFIRPFREAMFGLCHRFACTGEELPTSIAAELGYLYDMMERGGSLACDTVRLMYAFQQSH
QAVALGLVDRLSGGPTLMQSGIPLERLVDKFCRFLLENLSREEMHDAYGAPPDQRVIERL
FAFRTRTCIRSVASGLETTREDVQYVLSLSSDNAEPVEAAHFPSLVNAALRQTQPPIRAL
HPASQKVELVEQRREVLSLAPYLLCSSAGITVRSLQPELELELPLDAACYRYRLIGEVVG
VRPANVPASTNQQKAPAATSTVAFLRIQGLEPHQASLSAQEGSWYCFNDFTITAVRDAAQ
VERFDSCFMQPLLLLYRRETGVAAVALDDKPPVSFEARLWPDSETEWARVFALRPMSTTH
KRLLQAGDRNALRARLSFVPLQPGERLTRGTLVAIDTEFVLVSREKAEICCSRRSTGHTP
RWCRWSSPSLGQAPEEEEPLLRRVILEPSRKHVARVTVIRENGQVLLDDYVMPPPGCTIV
DYLTRYSGITAPDLQPNRTRHYLTLSKYVYAKLHALQRTGCVFVGHGLRSDFRQLNFLLR
SEQYRDTALLFRLPANERTRGRSRLLSLRFLAGCLLKRRVQNGSQGHDSVEDARAALDLY
RLYLELEQRQLLKTTVERLYEYGSRKHWQPDFADPFELAL
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccacttcatactcctgtggaagcgcctgtgtttcctggacttggagacccgatt
cgacgcacgcgctgggtttccgtgccgctcactgacccggataccgacgcgctgaacggc
ggatcgcgaccagctccaacacctgggacgcacggcactcgcttggttctcgtcggaacc
cagcatggacaagtacgcacgagcgtgtatccttcgggttgcctctttaccagctgggtc
ggatctgtggctggggcgctctccgatggcgttcgagacgttgccgcgatccaaggcgct
tcaacggagagcctccttgtctccgtatccgcaaatggaaccctgatacgaaccacgctg
ggtctaccactgcacacgttgacgagctcggactggacgcagtcgcgactctgtcgacca
atgcctctacagggccatgcgttgctcctggtaaccactgacctcggacgcatgcacctg
ttgcaggccgagagaggcactgcgctgcgctcgttcgtggatccaccgcatattcgtcga
gcgctcgctgcagactggctctacaaccaagcgattgttctgggatatgatgacggatct
attgcgctgaaggatccatcctcattgcgcgtgctccacgaggagccgcggcacccggca
ggcaacgctgcgcgctttcctgtcgtcgacctggtcgcgttaagcgagcatggtttagtg
gcggcagtctatggggttgtcccgctcattcgactctatgacattcgaaagggtctaggg
aacggcggtcgcgtcggcaaaatatcacccgctatcgtccaggagctggctgtgccgagt
tcggactcggtcattgccctgaaatggttaccagggaagcagcgcctgtggacgctgggt
gttggtggtcattgtgaacgtttcagcgtcgacggggctgcaagtgtcctctgttatgag
gctgggttgtgtttgccggtcggcaacggtctctactcctgcttcgatatcaccgctgaa
ggcggtacgttggtgactggcgacctcggcggttgtgtccagtatctgcatctcgaggaa
agtgagaagctggaagcattggcgaatgcccagtgtccagatccagcgctctccgagcct
gctctcatagaggctctctgttcgagggcggcacgcaacgcgaggccgcgtcgagacctc
accgactcgacacatacagaacagcgctgctggcttgcggatacgccctggcctttagtc
cagcagcaacggggcaatgcgacaaaacggttgaaattccgtttcccgctgctggccagt
ccgatagcaatacggagcgcccgctttgtgggtccagttggctacctgcccgtaactggt
tcagcatccgaccagctctacctgcaaccagatgaaggctggcaacagacgagtatctcc
actgcgagcatgcaaccaaaactggacacactcgaggaacgtgtgcgtttcagacgcatc
gatctggtgaaggcggagagtctcgaaggcttcgattatgccctgtacaatcgaacgcgt
ttttgtgggcttgaaaacagcctcccgacgatgtacatgaatccaatcttgcagatgttc
ttcttcattcgtccgtttcgtgaggcgatgttcggactgtgtcatcgctttgcgtgcact
ggcgaggagttgcccacgagtatagccgcggagctcgggtacctctatgacatgatggag
cgcggcggcagccttgcatgtgatacggtgcgtcttatgtacgcttttcaacagagtcat
caggcggtagctctgggtctcgtcgatcgtttgagtggtggtccaacgctgatgcagtct
gggatcccgctggagcgccttgttgataagttttgccgctttctgctggagaacttgtcg
cgcgaggaaatgcacgatgcgtatggcgctccgccagatcagcgggtcatcgagagactc
ttcgcctttcgaacgaggacctgtattcgttcagttgcgagcggattagaaacgacgcga
gaagatgtacagtacgtgctgtcgctctcgagcgacaatgcagaacctgtggaggcggca
cactttccatcgttggtgaacgctgcgctgcggcagacgcagccaccgatacgggcgctg
cacccggcgagccagaaagtggaacttgttgagcagcgtcgcgaggtcctctcgctggcc
ccctatctgctgtgcagcagtgcgggcatcacagttcggtcgcttcaacctgaactggag
ctcgagctgccgctcgacgctgcttgctaccggtaccgtctcatcggcgaagtcgtaggc
gtacgtccagcaaacgttccagcatccacaaatcaacaaaaagcgccggctgcgacctca
acagtggcatttctcagaatccagggactggaaccgcaccaggcatcactgagtgcccag
gaagggtcgtggtactgttttaatgattttacaatcactgcggtgcgcgatgctgcacaa
gtcgagcgcttcgattcgtgtttcatgcagccgctcttgctgctgtatcgtagagagacc
ggtgttgccgcagttgcgctcgacgacaagccgcccgtgtcgttcgaagcacgactctgg
cccgactcggaaacagagtgggcgcgcgtatttgcgctgcgccctatgagtacgactcat
aagcggctgcttcaagcgggcgacaggaatgcgctgcgagctcggttgtctttcgtgccg
ctgcagccgggcgagcgtctgacacgcggtacgctcgtcgcgatcgacactgagtttgtg
ctcgtatcccgggagaaggcagaaatatgctgcagccgtcgatcgacgggacatacgccg
cgctggtgccgctggagcagcccgtcattgggccaggcaccagaagaggaggagccgctc
ttgcgacgggtgattctggaaccctctcgcaaacatgtggcccgagtcaccgtgattcgg
gaaaatggacaggtgctgctggatgactacgtcatgcccccgcccggatgcacgattgtg
gactacctgacccgctacagtgggataactgcaccggatttgcagccaaaccgcacccga
cattatttgacgctgagcaagtatgtgtacgccaagttgcatgcattgcagcgcaccgga
tgtgtgttcgtgggtcatggtctaagaagtgattttcgccagttgaatttcctgcttcgg
tccgagcaataccgtgacacggcgctgttgtttcgcttgcccgcaaacgaacgtacgcgt
gggcggtctcgactgctttcattgcgctttctcgctggttgtctgttgaaacgacgggtc
cagaacggctcccaaggtcacgattccgttgaggacgcgcgtgcggcgctcgacctctat
cgtttatatctggaactcgaacagcgacagctcctcaaaacgaccgttgagcggctctac
gagtacggcagcagaaagcactggcaaccagactttgcggatccctttgaactcgcacta
tag
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