Cyanidioschyzon merolae: CYME_CMJ189C
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Entry
CYME_CMJ189C CDS
T00175
Name
(RefSeq) probable mRNA cap binding protein 80
KO
K12882
nuclear cap-binding protein subunit 1
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03013
Nucleocytoplasmic transport
cme03015
mRNA surveillance pathway
cme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CYME_CMJ189C
09122 Translation
03013 Nucleocytoplasmic transport
CYME_CMJ189C
03015 mRNA surveillance pathway
CYME_CMJ189C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CMJ189C
03041 Spliceosome [BR:
cme03041
]
CYME_CMJ189C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
CYME_CMJ189C
Spliceosome [BR:
cme03041
]
Common components
Common spliceosomal components
Cap binding complex
CYME_CMJ189C
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
16994073
NCBI-ProteinID:
XP_005534918
UniProt:
M1URS2
LinkDB
All DBs
Position
10:515788..518952
Genome browser
AA seq
1054 aa
AA seq
DB search
MSTSNAGNSDIMCGTVDWQLVTARIARLGDQFLLQLPNEPEAVADLYGDRPNKRRERIQG
FDSWKAAELVPALPTPDEVQDAVKDHMDLITSRKGVADPLTDLDADETSLHREKRARYTT
DAPSVASVSELVRYLEPTSAEAWIGAVALQVALWANRLREASSPVLPAAIAHEEDFQRRA
QMGVFATGEAPLVAPNPLLPTLVRCGTELGHKCDVFALFLACLVYPDRAKQRETMKEPEA
LSRTDAFCQHLARQVAETVFGLFNSALRHITTGAPIAEQSLMISITPNASATAKTAGFMK
LPPVLQARRALHFLAELANTHILDSEWFVRRILHDLLVEAALFGAEQDQAPLSRSQFLVE
LALDGLMHCGREAERVAADCVDAILQAAERFAGTIRSPSTIIEECARMERLFSPVKDVEL
NSPALDEAHRASLQVSRRFHELLLVCRKLRARSWHCNLLPQYHLLFWETRIRDSGLRMQL
PVPPLSRHSIDARYPVPSIRLHITKMDTTVEEHTSASETPTSPPVANEQNDSKAQSWWPA
MSFTDRFLAVERLSDMLDAFLADRRICVQMLRRPRAGFSMKDHQMMLVETILSAMLQIPR
SRNPLLFYATVLVELCRGGDPQTAIHLLQAVETLIREAQRLDPEVTERVAQWLAFHLSHF
QWEWNWDAWLPLQGNVHSAALIASMLEYAVRLSYRERIAEKTPSALHNLLVPPAEPVWET
ESPLIGSPAASLLASIPEPVKVELAQRLVASAYDAVPYLNEHVPKELRPAVFLQALLRGG
YGAPSFFANLVERWGGVLRELCRDPGAAAAGLQLVSVVLQVWESSHQHALLSLNCLSSAG
ILDPSTVVTGVYRQLLNRYPTSDDLSFAALNDLRFPFETVRFFLNQYRDRLRRIQTDIEM
LLLAISRAPERDLDTMEAALTRARQMLQQHRQGLKRFLAATLDSLAQILRHYHGSSGGDR
GDRDHHETDDHEDHGGTASATSASTGDTAPAALVRGWLLERSLGLVQELLRTQLDQTPRL
LGTLKALLGNFTNASLKRMLHDLDQLARWSLATV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacttccaatgcgggtaacagcgacatcatgtgcggaacagttgactggcaactg
gttactgcacgaatcgcccgtctcggtgatcaattcttgctccagcttcctaacgaacca
gaagccgtagcagatctctatggagaccggccaaacaagcgacgggaacgcattcagggc
ttcgactcttggaaagcagcggagctggtgcctgccttacctacgcccgacgaagtccag
gatgctgtgaaagaccatatggacctgatcacgagccggaagggggtagcggacccattg
accgacctcgatgcagacgagacttcgctgcaccgcgagaagcgagcgcgctacaccacg
gatgcgccttcggttgccagtgtctctgagctggtacgatacctggaacccacgagcgca
gaggcttggataggtgcggtggctctgcaggtggcactctgggccaacaggttgcgcgag
gcgtcctcgcccgtccttccagcagcgatcgcccatgaggaggattttcagcggcgtgcc
cagatgggcgtctttgcaaccggcgaagcacccctggtggccccgaatcccttgctgccg
actttggtacgctgcggaaccgagctcgggcacaaatgtgatgtgtttgctctattcctt
gcctgtttggtgtatccagatcgagcgaagcaacgagagacgatgaaggagccggaggca
ctttcgagaaccgacgcgttttgccagcacctcgcccgtcaagtagcggagacagttttc
ggacttttcaacagtgcgctgcggcacataacgacgggtgcaccgatcgcggaacagtcg
ctgatgatctctatcacgccaaacgcttcagcgactgcgaaaactgcaggcttcatgaag
ctacctccggtgctgcaggcacggcgagcactacatttcctcgccgaactcgcgaatacc
catattctcgactcggaatggtttgtgcgtcgcattctgcatgatctgttggttgaagca
gcgctttttggggccgaacaggatcaagcacccctcagccgttcacagtttctcgttgaa
ctcgctttggatggtcttatgcattgcgggcgcgaagcagaacgtgtagcggcggactgt
gtagatgcgattcttcaagcagcggagcgcttcgccggaacgattcgttccccgagcacc
atcatcgaagagtgcgctcgcatggaacgtctgttcagcccggtgaaagatgtggagctg
aactcgccagcactcgatgaagcacaccgtgcgtccctgcaggtttcacgacgcttccac
gagttgctcctggtttgccgcaagctgcgagcacgctcctggcactgtaacctgttaccc
cagtaccatctgctgttctgggaaacgcgtatccgagatagtggcttgaggatgcagctg
cccgtgccgccgctttcgcgacacagcatcgacgcacgctatccagtgcccagcatccgc
ttacacatcaccaaaatggacactacagtcgaggagcacacctccgcgtccgagactccg
acctcaccgccagtcgcaaatgagcagaatgactccaaagcacagagctggtggccggcg
atgagcttcaccgaccgctttctcgctgtagagcgactgagtgatatgcttgacgctttt
ctggccgatcgccgtatctgtgtccaaatgctgcgtcgaccccgagccggattctccatg
aaagaccaccagatgatgctcgtggagacgattctcagtgcgatgctgcaaataccgaga
tcgcgaaacccgcttttgttttacgcgactgtgcttgttgagctgtgtcgaggtggtgat
ccgcaaacagcgattcatttgctgcaggcggtcgagacgctcatccgggaagcgcagcgc
ctcgaccccgaggttacggaacgcgtcgcccagtggctcgccttccatttgtctcatttt
cagtgggagtggaactgggacgcctggctgccgctgcaggggaacgtccactcagcggcg
ctcattgcgtcgatgctggaatacgcggttcgtctctcgtaccgcgaacgaattgcggag
aaaacaccctctgctttgcataacttgctggttccacctgcggagcccgtctgggaaacc
gagtcaccgctgatcgggagcccggctgcatctctgctggcgagcattccggaacccgtc
aaggtggaattggcacagcgtctggtagcgtcagcgtatgatgcggtgccgtatctcaat
gagcatgttcccaaggagctgcgacctgccgtctttctccaagcgctgctgcgcggtggg
tatggagcgccgagtttcttcgccaacttggtcgaacgctggggcggtgttcttcgcgag
ctctgccgagacccgggcgcagcagcggcgggtcttcagctcgtctctgtggtgctccag
gtatgggagtcgtcccatcagcatgctctcctttcgctgaactgtttgagttcggcaggc
atactcgatccttccaccgttgtgactggcgtatatcgacaactgctgaaccggtacccg
acgagcgatgacctcagctttgcagcgctgaatgacttgcgttttcccttcgaaacagtg
aggttctttctgaatcagtatagagatcgtttacgccgaatccaaacagatatcgagatg
ctcttgctggctatatcgcgtgcaccagaacgcgacctggataccatggaggcagcgtta
acgcgggcgcgacaaatgcttcagcagcatcgacaaggcctgaagcgtttcctcgctgcc
accctggatagcctagcacaaatccttcgccactatcatggcagtagcggcggtgatcgt
ggtgatcgtgatcatcatgagactgacgatcatgaagatcatggtggcacagcgtctgcg
acctctgcctctacgggagacacggcaccagcagcgctcgttcggggctggttacttgag
cgttcccttggccttgtccaggaactcctacgaacccagctcgaccagacgccgcgccta
ctcggcacgctgaaggcgttgctgggcaactttacgaatgcatctctgaagcggatgctc
cacgacttggaccagttggctcgctggtcgctcgcaacggtttga
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