Cyanidioschyzon merolae: CYME_CMK235C Help Entry CYME_CMK235C      CDS       T00175                                  Name (RefSeq) DNA ligase I   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism cme  Cyanidioschyzon merolae Pathway cme03030   DNA replication cme03410   Base excision repair cme03420   Nucleotide excision repair cme03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cme00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     CYME_CMK235C    03410 Base excision repair     CYME_CMK235C    03420 Nucleotide excision repair     CYME_CMK235C    03430 Mismatch repair     CYME_CMK235C  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cme03032]     CYME_CMK235C    03400 DNA repair and recombination proteins [BR:cme03400]     CYME_CMK235C Enzymes [BR:cme01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      CYME_CMK235C     6.5.1.6  DNA ligase (ATP or NAD+)      CYME_CMK235C     6.5.1.7  DNA ligase (ATP, ADP or GTP)      CYME_CMK235C DNA replication proteins [BR:cme03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     CYME_CMK235C  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      CYME_CMK235C DNA repair and recombination proteins [BR:cme03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      CYME_CMK235C    NER (nucleotide excision repair)     Other NER factors      CYME_CMK235C    MMR (mismatch excision repair)     Other MMR factors      CYME_CMK235C BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  16994251 NCBI-ProteinID:  XP_005536624 UniProt:  M1VHX2 LinkDB All DBs Position 11:640263..643349 Genome browser AA seq 1028 aa AA seqDB search MTCNWQLAHVLWRQEHLRSMKVICTVAKKELSATFKRPSNGYELSFALPRPRPPQKHCGP TARRTAAAASRREVSCPTTPSRCRWSVRTHNLSAWNARTGTDLSGAAVVPSLQAASQPAL VSARLARCAPATCNAGHGISSRRERRRVSDFFGYIPLGSFEGPGRLLTIFESAEVSLVKE MPPLHRKQSRRVVCVADTSSDDSSSSAMASEASKFPGPDKFQNAALTRTSENELDANQPG TGTLDSVEETPVYGAPTTDASSDGLSPRTPRKPSGTSSSLDREEGDAGGSELFGTGRLRP TASEQVAEVKSDVSPADADSNHRLASTLQTAQLGSSEAKPPKKRARKGERAKRTLSTKAN GDSDDEDRQTGLYGALAADDYLKLFEPCWEPGQPVPYSFLANAFETMAGTSGRIDLTRQL ACVLFHVLNRTPVDLLPTIYLVINRLAPAHEGLEIGVGDALLLQALADATGRSLSKLRED YHRTGDLGDVAVHSRTTQRTMFAVPRLTIRNVYNELLAIARASGKAMQEEKRRRIQKLLV AAKNNEAKFIARALQGRLRIRLAEKTVILALAAAFVQNAAASRGTHPDAARVERAAHLLR TSSNECPSWNMITEALLELQDIDERLLERCHLTPGLPVMPMLAKPSRSIAEVLTRFEGMR FTCEYKYDGERAQIHGLADGSIRIYSRNAEDHTRKYPDVMEQILQAVGSSSDQPSFILDS EVVAFDRDAQRILPFQYIQQRARKHVSLDDLKTNVLIVAFDILYWRGEPLTRKPLAERRA ILRDAFQEVPGGFRFATRRDVSDLDGIQKFMEEAVRDSCEGLMVKALEGPLSTYEPANRT QHWLKLKKDYLRTIGDTLDLVPIGAYYGRGKRTGWFGSFLLACYNPETEQFEAVTRVGTG FSEEQMAQLHSEYAQYVLDSPRPYVACSESVKPDIWLDPRQVWEVQCADLSISPAYVAAC GYIAPDKGISVRFPRLLRIRSDKRPEDATTSAQLAEMYRNQFRSTESSSESSSSAAPSDE EPERNADD NT seq 3087 nt NT seq  +upstreamnt  +downstreamnt atgacctgcaattggcagctagctcacgtactctggcgtcaagagcatcttcgttccatg aaggttatctgcactgtcgcaaaaaaagaattatctgccacattcaagcgaccttcgaac gggtacgagctgtcgttcgcgctacccaggccccgtccgccgcaaaagcactgcgggccc acagctcgtcgaactgcagctgctgcttcgcggcgtgaagtctcctgtccaactaccccg agccgatgccgttggagcgtgcggacacacaacctgtccgcctggaacgcccgaacagga actgacctcagcggggcggcggtggtgccttcgctgcaggccgcctctcaaccagcattg gtgtcggcgcggttggcgcgctgcgcacctgcaacttgcaacgccgggcacggcataagc agccgcagagaacgacgccgagtgagtgatttcttcggctacatcccgttgggaagtttc gagggacccgggaggctgttaacaatcttcgagagtgcggaagtgagcttagtgaaggag atgccccctctgcaccgaaagcagtcccgtcgcgttgtatgtgttgcggacacgagcagt gatgacagttcgtcatcggcaatggcttcagaagcctcaaagttccctggccccgataag tttcaaaacgcagcgcttacacgcacatccgagaatgagttggacgcaaatcagcctgga actggcacgctcgacagtgttgaagaaactccagtctacggagcgccaaccacggacgct tcgagcgacggtttatctccaagaacgcctaggaaaccttcgggtacatcttcatcgttg gatcgggaagagggagacgctggtggctccgagttgttcggaaccggacgattgcgacca acagcctcggaacaggtagcggaggtcaagagcgatgtctcgccggcggacgcggacagc aaccaccggctcgcatcaacgctccagaccgctcagcttggttcaagcgaagcgaagccg cccaagaaacgagcccgcaaaggagagcgcgccaaacgcacgctcagcaccaaggcgaac ggcgactcggatgacgaggatcgacagacaggactatacggtgccctggcggcagacgat tacctgaagctgtttgagccctgttgggagcccggccaacccgtcccatatagttttctt gcgaatgcgtttgaaacaatggcgggaacaagcggacgcatcgacctgacccgccaactt gcctgtgttctgttccatgtactgaatcgaacgccggtggatctattgccgaccatttac ctagtcattaaccggctagcaccagcgcatgaaggtcttgaaatcggcgttggagacgct ctgttgttgcaagcgcttgccgatgccacagggcggagtctcagcaaactcagagaagac tatcaccggacaggcgacctgggagatgtcgccgtccattcgcgaacgacgcagcgcacc atgttcgccgtgcctcgcctgacgattcgcaatgtctacaatgagttgctggccattgca cgcgcttccggtaaggcaatgcaggaagaaaaacgtcgccgtattcagaagctcctcgtc gctgcaaagaataatgaagcgaagtttattgccagggcactacaaggaagattgcgtatt cggcttgcggagaaaaccgttattctggcacttgcggccgcatttgtacagaatgcggca gcgagtcgtggtacgcacccggatgcggcacgcgtcgaacgggctgcgcacctactgcga acatcatccaatgaatgcccgtcatggaatatgattactgaggcattgctcgagttgcaa gatatcgatgagcggcttctcgagcgatgtcatttgacaccaggcctcccagtgatgccc atgcttgccaaacccagtaggtctatagcggaagtcctcactcggttcgaagggatgcgc tttacctgcgaatacaagtatgatggcgagcgagcccagatccacggcctcgcagatgga tccatccgcatatactcacggaatgctgaagatcatacgcgcaaatatccggacgtcatg gagcagatactacaggcggttggctcgtcatccgatcagccttcttttattctggattcg gaggtggtagcctttgatcgagacgcccaacgcattctacctttccagtacattcagcag cgcgcgcgcaaacacgtctcgctggacgacctcaaaacgaacgttctcatcgtggcgttc gatatcctatactggagaggagagcccctgactcgcaagccattggcagaacggcgagcg atcctgcgggatgcctttcaagaggtgccgggtggttttcgctttgcgacgcgacgcgat gtaagcgacctggacggtattcaaaagttcatggaggaggctgtgcgtgattcgtgtgag ggcctcatggtgaaagcgcttgaaggtcctctttcgacttatgaaccggcgaatagaaca cagcactggctcaagctcaagaaggactacctccggacaatcggcgatacactggatctg gttccgattggtgcgtattacggtcgcggcaagcgaaccggctggttcggctcgtttttg ctcgcctgctataatccagagacggaacagttcgaggcagtaacacgagtcggcacgggc ttttcggaagagcagatggcccagctccactcggagtatgcgcagtacgtgctggatagc ccacggccgtatgtggcctgcagcgagtccgtgaaaccggacatttggttggatccccgc caggtttgggaggttcagtgcgctgatttgagcatctcgcccgcttacgtggcagcctgt gggtacattgccccagacaagggcatctcggttcgctttcctcgtctgctacgaatccgg agcgataagcggccggaggatgctacgaccagtgcacagctcgctgaaatgtatcggaat cagttccggtctacggagagctcgtctgaatcttcatcatctgcagcgcctagcgatgaa gagccagaaagaaacgcggatgactag

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