Cyanidioschyzon merolae: CYME_CML016C
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Entry
CYME_CML016C CDS
T00175
Name
(RefSeq) probable DNA-(apurinic or apyrimidinic site) lyase
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CYME_CML016C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CML016C
Enzymes [BR:
cme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
CYME_CML016C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CYME_CML016C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
16994548
NCBI-ProteinID:
XP_005536692
UniProt:
M1USI2
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All DBs
Position
12:complement(29339..30595)
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AA seq
418 aa
AA seq
DB search
MSRARLPPLLYTAVVRLRTAVGIEPLIRGMASSTRAAVNPDTARLLVSARRQKQASFPLV
PLAMAGEGERKRRKTVQRSPKDEKKAEKGNAVQNAGRGELRDTGKESPADVPISSSGRPW
GAPQDPKVAKLASYNIASLRSALSRSKHLFDAFIVHECPDLLTVQEIKVSEPIPEAIKSA
LQEHYETCLFHPCRSKRGYSGTALFLRKGSCLGEPVRVQYGFDPELGVEDSEGRVIIVEF
SSCVVCSMYVPNSGEGLKRLDYRIRVWDEAVRAQLKRLGQGTGKPIIWCGDLNCAHQEID
IWNPEGNRRSAGFTDEERASFSQTLQECALLDTFRWLHPSVRAYSYIGYRHVQNYFQNRG
WRLDYFCCSASAAAHIVDSYIRFDIEIYGAAFQQTQVKREEVRRLSDHCPVVLLFRTV
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtctagggcgcgtttgccgccactattgtacaccgctgtcgttcgacttagaacggcg
gtgggtatcgagccactcatacgaggcatggcctctagtacccgagcggcagtcaacccg
gataccgcacgcctcctggtgagcgcgcgcagacagaagcaagcttcgtttccacttgta
ccactagcgatggctggcgagggtgaaaggaaacgacgcaaaacagtgcagcgctctccg
aaagatgaaaaaaaagctgaaaaaggaaacgctgttcaaaacgctggtcgcggcgaattg
agagacaccgggaaggaaagtcctgcagatgtaccgatcagttcgagcggacgcccctgg
ggtgcgccgcaagacccgaaagtcgcaaagctcgcctcctacaacattgcttcactgcga
agtgcgctctcaagatcgaaacaccttttcgacgcgttcattgtgcacgagtgcccggac
ctgctcactgttcaggagataaaagtgtcagaacctattcctgaagcgatcaagtccgcg
ctccaagagcactatgagacttgccttttccatccgtgtcgaagcaagcgtgggtactct
gggacggcactctttctgcgaaaaggctcttgccttggcgagcccgttcgagtccaatac
gggttcgatcccgagctcggcgtagaagattctgaggggcgggtcatcattgtcgagttt
tcaagctgtgtggtgtgtagcatgtacgtaccgaatagcggcgagggcctcaagcgcctt
gattatcgcattcgcgtatgggacgaagcagttcgggcacagctgaaacgccttggacaa
ggcactgggaaacccatcatctggtgcggtgacctgaactgcgcccaccaggaaatcgat
atctggaacccggagggcaatcgtcgcagcgcgggctttactgatgaggagcgggcgagt
ttttcgcaaaccctgcaggaatgcgcactcctggacacgttccgctggctgcatccatct
gtccgcgcctactcctacatcgggtatcggcatgtccagaactacttccagaatcgagga
tggcgcttagactacttctgttgtagcgccagtgctgccgcacacatcgtcgacagctat
attcgctttgatatagagatctacggcgcagcgtttcagcaaacgcaagtaaagcgcgaa
gaggtgcggcgactgtcagatcattgtccagtcgtactgctttttcgcacggtctga
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