KEGG   Cyanidioschyzon merolae: CYME_CML103C
Entry
CYME_CML103C      CDS       T00175                                 
Name
(RefSeq) similar to splicing factor 3b subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CYME_CML103C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cme03021]
    CYME_CML103C
   03041 Spliceosome [BR:cme03041]
    CYME_CML103C
   03036 Chromosome and associated proteins [BR:cme03036]
    CYME_CML103C
Transcription machinery [BR:cme03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     CYME_CML103C
Spliceosome [BR:cme03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    CYME_CML103C
 Complex B
    CYME_CML103C
 Complex C
   U2 SnRNP specific factors
    CYME_CML103C
Chromosome and associated proteins [BR:cme03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     CYME_CML103C
    TFTC complex
     CYME_CML103C
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_2nd Beta-prop_RSE1_1st Cwf_Cwc_15 DUF2613 RNA_pol_3_Rpc31
Other DBs
NCBI-GeneID: 16994757
NCBI-ProteinID: XP_005536752
UniProt: M1USN7
LinkDB
Position
12:232158..237194
AA seq 1678 aa
MAEPLALFALDLQQPSALVAATSGYFTQEEPTGTRDLVLVRQSGSYGATIECWAYNAELG
KLQRVQATSAAFAEASNGVTFAHIWHVAPVRSWSGPDHLLVVSDSGTLSLLKWCGSEAVS
AGSIRASLRPWCVEQAAAADADVTYDIGWKCVSSAVFSKPGARASRPGAFLAIDEQSQAC
ALASLDGSICAFALPQHTSEASTASKAGHRYSGKKRNPAGTVLSRSATSVQTSRENPVRR
SSRRRKRPLGADAASSVSSVEAGAMHPGSQRAASDRRASRRDKLTEGTSTHFTDDNDDDD
DDDDDDDDDSDDDDDDDDHDDDTNARLGDGAPSGDADEDGHEDPGRTTRGFSAPIEWSTE
DRMALGVGTCFGLVALPWSRAENESLFVMLMDRSLSTATVAPGPDRRLLLLLVDRNAQTV
HAKAMSSPLDPSAYGIYALSDGMLLIVSRSTVEVWCFRGTPEANANEEPSSGFSANAGTF
SCLAKLPHRALLTRRSSTRDGAHDITVRNALFDSAHLQANGEPSGSVLITAAALWEAACS
REQLCVLLGDEDGYLFRLTIVLRPVEDGIQSEALSVRMLGRFHAPVSALCFLGGDDIAAA
AVFVTLEQGDHAVVLLDRPQLQAGKRDSLPVASALPDTSSDGTSASRTEHLAGLDDAMSN
SNNTLSIVDTIPGHHPVIMSLLLRTDRCCQAEAAQTGCLPTWQLLGASATADPNETPLRI
FVPMRDTVALAQSPVDGRAQRVFALPPLLQRSTTEPAATLPPESVSDTATVALLVLSFTQ
QTRVFRFQSLALHEEHTLGFEHNTSTVHAALLCSDWSRSACCWVQVHSHGVRLIGAASSD
SRSASVVDVYTASTQQPIVAADSTLSQVLLLLADGQLVYLVASDTDSDSDKQSKVRGNAS
PPAMELGFGPRSALQSAAAANAPTEAPPRIPPSPTSRAVACCLVPLDNPSWSSYLVYVEA
GASPVLRICQVPERATHAPVQCLYSVLLPQLPTGIAAVHTAGTASLVDLWAGLEDGTLLR
VEAVDVAELQMTTERGTPRLHRYHLGAAAGLRLRRVLVPPALGTEALLVLGSSSWLIPLS
SSSSSSLWTHPYPIHAGQLLDAASFPLPQMCSTVDPETHSEAVAVFPAATAIAALSEQGR
TLEFLSFAADDSSSNLLTIRPVSKPQPADAAASGTTVSRKVVRKLCWIFPNELAAIAIST
EGERGPQVQLQLVQVPGSERVASQHLSSSDMESHAFWQHLRLDGGVRIAGAPAWGGIRVT
SMISVDLPSLSLPSSDTKNEQQLHAAGRMPVALLVAVAPPAAEAETAPESGDVARAFLLT
YLVERQAASDAPWKLVLTERLSFPESIGDLSRVGRHLVVAHGNRLALYTHTRCGWRPLTV
SKRALASPIVALTAHEALCRIFVASLHHGISLFKYYVQENRLVLVAEDMQRRWIHRLQLL
DADTVVAADKFGSIAVLRLPVESSAAIEGDPSYGRLAERYGASPESARSFVARLMPECSV
HVGSVVTSLHVFGYGAATDPDATPASAPRSWTEAEAILYGTVSGGFGMLIPFRTRAEWDI
VQRLERELHLFWAKCCAPGHTMDATHTRNLLHASVLRFQGRIEPTRHVVNGHLCGLFALL
DPETQRSIAARVLGLQEPSTPSEEQRALTLLLSTLHRLYARVLWPLGHEVQAAPLHAT
NT seq 5037 nt   +upstreamnt  +downstreamnt
atggcggagccgctggctctgtttgcgctggatctgcagcagccaagcgccttggtagcc
gcaacctcaggttatttcacgcaagaggaaccaactggtacgcgggacttggtgctggtc
cgccagagtgggagctacggtgcgacaattgagtgctgggcttataacgcggaactggga
aaactacagcgagttcaggcgacgagtgccgctttcgccgaggcttccaacggggtcacg
ttcgcgcatatttggcacgttgctccggtacgcagctggagtggacctgatcacttgctt
gtggtttcagactctggcacgctgagcttgctgaaatggtgcggctcggaggccgtatcc
gcgggtagcattcgtgcttcattgaggccgtggtgcgtcgagcaggctgctgccgctgat
gccgatgtcacatacgacattggctggaaatgcgtcagcagcgctgtcttcagcaaaccg
ggagcacgagcgagtcgccccggtgctttcctagcaatcgatgaacaaagtcaagcctgt
gcactggcttcgttggacggatcgatctgtgcatttgcgcttccgcagcacacctcggaa
gcctcgactgcatcaaaggctggtcatcgatactcgggcaagaaacggaatccagcggga
accgtactttctcgatcagcgacgtctgtgcagacgagtcgcgagaatcctgtccgtcgt
tcatctcgacgccgtaaacgcccactcggtgcggacgcagcctccagcgtatcgagtgtg
gaagctggggcgatgcaccccggcagtcagcgtgcggctagcgacaggcgtgcctcgcgt
cgagacaagctgacggaaggtaccagcacccatttcactgatgataacgacgacgacgac
gacgacgacgacgacgatgacgatgatagtgatgatgatgatgatgatgatgatcatgac
gatgatacgaatgcccggctcggagacggtgctccatctggtgacgcagacgaagacggc
catgaggatcccggtcgaacgacgagaggcttctccgcccccatcgagtggtcgaccgaa
gatcgaatggcgctcggtgtaggcacatgcttcggacttgtcgcgctaccgtggtctcgt
gcagagaacgagtcgctgtttgtcatgctcatggatcgctcactatcgacagcaacagtg
gcgcccggacctgatcgtcgcttgctgctcctgctggtcgaccgtaacgctcaaaccgta
cacgccaaggcgatgagcagcccgctggaccccagtgcatatggcatctatgcgctctct
gacggaatgcttctcattgtatcgcgctccaccgttgaagtctggtgctttcgcggtacc
ccggaagcgaacgcgaatgaagagccatcgtcagggttttcggcaaatgcggggacgttc
tcctgcctcgcgaagcttccacaccgagcgctgcttaccaggaggtcctcgacgagagac
ggcgctcatgatatcacggtgcgtaacgccttgttcgacagcgcacacctccaggcaaac
ggggaaccttcggggagcgttctcataacagcagccgcgctctgggaggcagcttgctca
agggaacagctttgcgtgctccttggcgacgaagatggctatctattccggttgacgatt
gtgctcaggcccgtcgaggacggcatccaaagcgaagcactttccgtgcggatgttggga
cgcttccacgcacccgttagcgctctctgtttcctgggcggtgatgacattgcagcagcc
gcggtctttgtgaccctggagcaaggggatcatgccgttgtgctcctcgataggccgcag
ctgcaagctgggaagcgcgactcgcttccggtcgcatccgcgctgccggatacgagcagc
gacggcacctctgcgtccagaacggagcacctggcgggccttgacgacgccatgagcaac
agcaacaacacgctgagcattgtcgatacgatacctggtcaccatccggtgatcatgagt
ttgctgttgcggacggatcgctgctgccaagctgaagcagcacaaactggctgcctgccg
acctggcagttactgggagcgtcagctaccgctgatcccaatgaaacccccctccgtatc
ttcgtaccaatgcgggatacagtagcactggcacagtcaccggtggacggtcgagcacag
cgggtcttcgccctgccgccgctgctccagcgttctaccacggaaccggctgcaacgttg
ccgcctgaatcagtctccgataccgcaactgttgctctcctggtgctctcgtttacccag
cagacgcgagtgtttcgcttccagtccctggcgcttcacgaggaacacacgctcggtttc
gagcacaacacgagcaccgttcatgcagcactgctctgcagtgactggtcgcgtagcgct
tgctgctgggttcaggttcacagccatggggtgcgcttgatcggtgcggcgtcctcggac
tcaagaagcgcctctgtggtcgacgtgtacaccgccagcacgcagcagcccattgtagcg
gccgatagcactctatcccaagtgctgctgctcctcgccgacggtcaactggtctacctg
gtagcttccgacaccgattcggattctgacaagcaatccaaagtcagaggtaacgcttct
ccgccggccatggagctcggattcgggccccggagtgctttacaaagcgctgcggcggct
aatgcgcccaccgaagctcctccacgaataccaccgtcgccaacgagtcgtgctgtggcc
tgctgcctggtgccgctggataatccatcatggtcctcgtatttggtttacgtcgaagcg
ggtgcatctccagtgctgcgcatctgtcaggtgccggagcgagcgacgcacgctcccgtg
cagtgcctgtacagcgtgcttctgccgcagctgccaaccgggatagctgcagtgcacacc
gcaggcacagcgtcgcttgtcgacctctgggcaggcctcgaagacggtaccttgctgcgc
gttgaggcggtagatgtggccgagctccagatgacaacagagcgaggcacaccacgtctg
cacaggtatcacctcggagcggcagccggtctgcgcctgcgtcgcgtgctggtgccacca
gcgctcggcacagaagcgttgctggtgttgggctcgagttcctggttgataccactctcg
tcgtcgtcgtcgtcgtcgttatggacgcatccgtaccccattcacgctgggcagctactc
gatgccgccagttttcccctgccgcagatgtgctccaccgtggatcccgagacgcactca
gaggctgttgcggtgtttccagcggcaacagcgatcgcagcgctcagcgaacagggtcgc
acgctcgagtttctcagctttgccgccgacgactcgagctctaacctgctcaccattcgc
ccagtgtcgaagccgcagccagcagatgctgctgcatcaggaaccactgtgtcacggaag
gttgtccgcaaactctgctggatctttcccaatgaacttgccgccattgcgataagtaca
gaaggcgaacgcggaccccaggttcagttgcagctggtacaggtccccggatcagaacgg
gtagcgtcgcagcacttgtcatcgagcgacatggagtcgcatgctttctggcagcatttg
cggcttgacggaggtgtgcgtatcgccggtgcacccgcctggggcggtatacgcgtcacc
agtatgatcagcgtcgatttaccgtcattatcattaccatcgtcagatacaaagaacgaa
cagcagcttcacgctgccggtcgaatgcctgttgccctgctggttgccgttgcaccccca
gctgctgaagcggaaaccgcgccggaaagcggcgatgtagcgcgggcgttcctcctgacg
tatctggtggagcggcaggcagcgagcgatgcgccctggaaactcgtcctgactgagcgc
ttatcgtttcccgaatccattggtgacctatctagggttgggcggcacctcgtggttgcc
cacggcaatcgtctggcactctatacgcacacgcgttgcggctggcgcccgttgaccgtg
agtaagcgcgcacttgcctctcctatcgtcgcactgaccgctcacgaagcactgtgtcgt
attttcgtcgctagtttacatcacggcattagtttattcaagtactatgtacaagagaat
cgacttgttctagtggctgaggacatgcagcggcgctggatccatcggctccagctactc
gatgcagataccgttgttgccgctgacaagttcggctccatcgcggtgctgcgtctgccg
gttgagtccagtgcagcgattgagggtgatcccagttacgggcgtctggctgagcggtac
ggagccagtcccgagtcagcgcgttcttttgtggcgcgtctcatgcccgaatgctcggtc
catgtcggtagcgtggtgacgagtctccatgttttcggctacggagccgccaccgatcca
gatgcaaccccagcatccgcaccccgatcatggacagaagcggaagcaatcctctacggt
accgtgagtggaggattcgggatgttgattccttttcgaacgcgagccgaatgggatatt
gtgcagcgcctcgaacgagagctgcacttgttctgggcgaaatgctgtgcacccgggcac
acaatggatgcaacgcatacccggaacctgctgcacgcgtccgtgctgcgctttcaagga
aggatcgaaccgacacgccatgttgtcaacgggcacttgtgtggattatttgccctcttg
gatcctgagacacagcggagcattgcggcacgtgtgttgggtctccaggaaccgtcgaca
ccaagcgaagaacagcgagcgctgacgctcctgctcagcacgttgcatcgactgtatgca
cgggtgctgtggccgcttggacacgaggttcaggcggctccgttgcatgcgacgtaa

DBGET integrated database retrieval system