KEGG   Cyanidioschyzon merolae: CYME_CML140C
Entry
CYME_CML140C      CDS       T00175                                 
Name
(RefSeq) RNA helicase
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CYME_CML140C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cme03019]
    CYME_CML140C
   03036 Chromosome and associated proteins [BR:cme03036]
    CYME_CML140C
Enzymes [BR:cme01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CYME_CML140C
Messenger RNA biogenesis [BR:cme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     CYME_CML140C
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     CYME_CML140C
Chromosome and associated proteins [BR:cme03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    CYME_CML140C
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 16994524
NCBI-ProteinID: XP_005536783
UniProt: M1VDC7
LinkDB
Position
12:complement(332779..334194)
AA seq 471 aa
MQRTAAPGWVVEQLRGPETRAGSQQLPSGAAAPVGVVPPGEQRIMHPQTRQFVGLGGGVG
PAAAPSQVEDWRRNLQAPPKDTRYRTEDVTATRGNSFEDYYLRRELLMGLFEMGWERPSP
VQEAAVPVALAGRDVLARAKNGTGKTGAFLIPILERLDTKKNAIQALVLVPTRELALQTA
AVAKALGKRLDGLQVMTTTGGTSLRDDILRLEQIVHILIGTPGRVLDLAEKGIAKLNECK
MCALDEGDKLLSPEFTPVIEQIVTKQLPPDRQLMLFSATFPISVKGFRDRHLRKPYELNL
MEELTLRGITQYYAFVDEGRKIHCLNTLFSKLRINQSIIFCNSVSRVELLAKKITELGYS
CYYIHAKMPQYQRARVFHDFRNGACRNLVSSDLFTRGIDVQAVNVVVNFDFPKNAETYLH
RVGRSGRYGHRGLAISLVTQDDRLNLYRIEHELGTKIAPIPPAVDESLYCA
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgcagcgtacggcagcaccaggctgggtagttgagcaactcagaggacctgagacgcgc
gcggggtcccagcaactaccgagcggggcggctgctcccgttggggtcgtcccgcccggt
gaacaacgcattatgcatccccaaactcggcagtttgtgggacttggtggtggtgttggc
cccgcagcggcgccttcgcaggtcgaggactggcgccgtaacctccaggctccgcccaag
gacacgcgttatcgcacggaggatgtgacggctacgagaggaaacagtttcgaggactat
tatttacgtcgagagttgctgatggggctttttgaaatgggctgggagcggccttctccg
gtccaagaagcggcggtgccggtagcgttggccgggcgcgatgtactcgcccgcgccaaa
aacggcactggtaaaacaggagcttttcttatcccgatcctagagcgactggacacgaaa
aagaacgcgatacaagcacttgttttggtgccgacgcgtgagctcgcccttcagacggct
gcagttgcgaaagcgctcggcaaacgtctcgatggcctgcaggtcatgacgacaaccggg
ggcacctccctgcgggatgacatcctgcggctagagcaaatcgtacatattctgatcggc
acgcctggtagagtcctggatctagccgagaaaggcatagccaaattaaatgagtgcaag
atgtgtgctttggacgagggcgacaagctgctctcgccggagttcacgcccgtcatcgaa
cagatcgtgaccaagcaactgcctcccgatcggcagttaatgctgttttcagcaacgttt
ccgatttccgtgaagggcttccgagacagacaccttcggaaaccctacgaactgaatctc
atggaagaattgacgttgcggggaatcacgcaatattacgcattcgtggatgagggtcgc
aaaattcactgtttgaacacgcttttcagcaaactgcgaatcaaccaaagcatcatattc
tgcaactcggtttcgcgggtggaacttctcgccaagaaaataaccgaactgggctattcc
tgttattatatccacgccaagatgccgcagtatcaacgagctcgtgtttttcatgacttt
cgcaacggcgcctgccgaaacctcgtttcgagtgacctcttcacacgcggcatcgacgta
caagcggtgaacgtggtcgtgaacttcgacttcccgaagaacgcagaaacatacctgcac
cgagtcgggcgctctggacggtacggacaccgcggtctggcgatcagtctcgtaacgcaa
gacgatcgcttgaacctgtaccgaatcgaacacgagctggggaccaagatcgctccgatc
ccacctgcagttgatgagtctttgtactgtgcgtga

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