Cyanidioschyzon merolae: CYME_CML140C
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Entry
CYME_CML140C CDS
T00175
Name
(RefSeq) RNA helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CML140C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CML140C
03036 Chromosome and associated proteins [BR:
cme03036
]
CYME_CML140C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYME_CML140C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CYME_CML140C
mRNA degradation factors
5'-3' decay
Decapping complex
CYME_CML140C
Chromosome and associated proteins [BR:
cme03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CYME_CML140C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
16994524
NCBI-ProteinID:
XP_005536783
UniProt:
M1VDC7
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All DBs
Position
12:complement(332779..334194)
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AA seq
471 aa
AA seq
DB search
MQRTAAPGWVVEQLRGPETRAGSQQLPSGAAAPVGVVPPGEQRIMHPQTRQFVGLGGGVG
PAAAPSQVEDWRRNLQAPPKDTRYRTEDVTATRGNSFEDYYLRRELLMGLFEMGWERPSP
VQEAAVPVALAGRDVLARAKNGTGKTGAFLIPILERLDTKKNAIQALVLVPTRELALQTA
AVAKALGKRLDGLQVMTTTGGTSLRDDILRLEQIVHILIGTPGRVLDLAEKGIAKLNECK
MCALDEGDKLLSPEFTPVIEQIVTKQLPPDRQLMLFSATFPISVKGFRDRHLRKPYELNL
MEELTLRGITQYYAFVDEGRKIHCLNTLFSKLRINQSIIFCNSVSRVELLAKKITELGYS
CYYIHAKMPQYQRARVFHDFRNGACRNLVSSDLFTRGIDVQAVNVVVNFDFPKNAETYLH
RVGRSGRYGHRGLAISLVTQDDRLNLYRIEHELGTKIAPIPPAVDESLYCA
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtacggcagcaccaggctgggtagttgagcaactcagaggacctgagacgcgc
gcggggtcccagcaactaccgagcggggcggctgctcccgttggggtcgtcccgcccggt
gaacaacgcattatgcatccccaaactcggcagtttgtgggacttggtggtggtgttggc
cccgcagcggcgccttcgcaggtcgaggactggcgccgtaacctccaggctccgcccaag
gacacgcgttatcgcacggaggatgtgacggctacgagaggaaacagtttcgaggactat
tatttacgtcgagagttgctgatggggctttttgaaatgggctgggagcggccttctccg
gtccaagaagcggcggtgccggtagcgttggccgggcgcgatgtactcgcccgcgccaaa
aacggcactggtaaaacaggagcttttcttatcccgatcctagagcgactggacacgaaa
aagaacgcgatacaagcacttgttttggtgccgacgcgtgagctcgcccttcagacggct
gcagttgcgaaagcgctcggcaaacgtctcgatggcctgcaggtcatgacgacaaccggg
ggcacctccctgcgggatgacatcctgcggctagagcaaatcgtacatattctgatcggc
acgcctggtagagtcctggatctagccgagaaaggcatagccaaattaaatgagtgcaag
atgtgtgctttggacgagggcgacaagctgctctcgccggagttcacgcccgtcatcgaa
cagatcgtgaccaagcaactgcctcccgatcggcagttaatgctgttttcagcaacgttt
ccgatttccgtgaagggcttccgagacagacaccttcggaaaccctacgaactgaatctc
atggaagaattgacgttgcggggaatcacgcaatattacgcattcgtggatgagggtcgc
aaaattcactgtttgaacacgcttttcagcaaactgcgaatcaaccaaagcatcatattc
tgcaactcggtttcgcgggtggaacttctcgccaagaaaataaccgaactgggctattcc
tgttattatatccacgccaagatgccgcagtatcaacgagctcgtgtttttcatgacttt
cgcaacggcgcctgccgaaacctcgtttcgagtgacctcttcacacgcggcatcgacgta
caagcggtgaacgtggtcgtgaacttcgacttcccgaagaacgcagaaacatacctgcac
cgagtcgggcgctctggacggtacggacaccgcggtctggcgatcagtctcgtaacgcaa
gacgatcgcttgaacctgtaccgaatcgaacacgagctggggaccaagatcgctccgatc
ccacctgcagttgatgagtctttgtactgtgcgtga
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