Cyanidioschyzon merolae: CYME_CML180C
Help
Entry
CYME_CML180C CDS
T00175
Name
(RefSeq) similar to 3'-5' exoribonuclease CSL4
KO
K07573
exosome complex component CSL4
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYME_CML180C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cme03019
]
CYME_CML180C
Messenger RNA biogenesis [BR:
cme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CYME_CML180C
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CYME_CML180C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
Cytochrom_B558a
PCB_OB
Motif
Other DBs
NCBI-GeneID:
16994613
NCBI-ProteinID:
XP_005536816
UniProt:
M1V5J5
LinkDB
All DBs
Position
12:451287..451928
Genome browser
AA seq
213 aa
AA seq
DB search
MSAQERLTCRNHETIQSHLGTRIALRKARGFTVLCKTQYSSAYMSHRSAFFVLPGEVTGN
AEELAYNASGVFYKWDLELRSLYAGVLTCSEQCATSAKAAQRLATVQCDLENPRGDQKAS
ALIPRPGKRVIAVVLRVNRRQATALILHVGTVPAKSEFIGVVRQQDIQEDNWDSVRVYDH
LQPGDLIAAVVLSDLEQKHYYLRVASMPFLIRR
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctcaggagaggttaacttgtcggaaccatgaaacgatacaatcgcatctcggt
actcgtatcgccttgcgcaaagcgcgtggcttcacagtgctctgcaagactcagtatagc
agcgcttacatgtcacatcggagtgcgttctttgtgctccccggtgaggtgactggaaac
gccgaagaacttgcttataatgcttctggcgtgttctacaagtgggacttggagctgcgt
tcgctctacgctggagtcttaacctgctccgagcagtgcgcaacttctgcaaaggctgcg
caacgactagcaacagtgcagtgtgacctcgaaaaccccaggggtgaccaaaaagctagc
gcacttataccgagaccaggaaaacgcgtcattgctgttgttttgagggtcaacagacgc
caggcgactgcactgattcttcatgtggggacagttccagcgaaaagcgaatttataggt
gttgtccgtcaacaggatattcaggaggataactgggactcggtgcgcgtctacgaccat
ttgcaaccgggcgaccttattgcagcggtcgtgctctcagatctagagcagaagcactat
taccttcgcgtggcatcgatgccttttttaattcggcgataa
DBGET
integrated database retrieval system
