KEGG   Cyanidioschyzon merolae: CYME_CML307C
Entry
CYME_CML307C      CDS       T00175                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03030  DNA replication
cme03410  Base excision repair
cme03420  Nucleotide excision repair
cme03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CYME_CML307C
   03410 Base excision repair
    CYME_CML307C
   03420 Nucleotide excision repair
    CYME_CML307C
   03430 Mismatch repair
    CYME_CML307C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cme03032]
    CYME_CML307C
   03036 Chromosome and associated proteins [BR:cme03036]
    CYME_CML307C
   03400 DNA repair and recombination proteins [BR:cme03400]
    CYME_CML307C
DNA replication proteins [BR:cme03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    CYME_CML307C
  DNA Replication Termination Factors
   ELG1-RFC complex
    CYME_CML307C
Chromosome and associated proteins [BR:cme03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    CYME_CML307C
DNA repair and recombination proteins [BR:cme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     CYME_CML307C
  Check point factors
   HRAD17(Rad24)-RFC complex
    CYME_CML307C
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 Rad17 RuvB_N AAA_22 AAA_11 AAA_5 Rep_fac_C AAA_16 SLFN-g3_helicase AAA_assoc_2 AAA_14 RCF1-5-like_lid Mg_chelatase AAA_28 AAA_18 AAA_lid_RFC1 ResIII Cdc6_lid RNA_helicase KTI12 AAA_24 AAA_30 nSTAND3 AAA_19 AAA_25 DNAX_ATPase_lid TIP49 ABC_tran AAA_2 AAA_33 AAA_7 bpMoxR AAA_17
Other DBs
NCBI-GeneID: 16994727
NCBI-ProteinID: XP_005536914
UniProt: M1VIF9
LinkDB
Position
12:782544..783623
AA seq 359 aa
MARGDDHATQPWVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYG
PPGTGKTTTALALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSIEES
VDAQVPGFKIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIPPLASRCAK
FRFKALEDGAVIARLEHIARTEGMGPLPPEASRLLAKAAAGDLRRAVNLLQSCADWARSA
DGSQRVLEPEMVSEAACMVPASVVERFYDICVSRNEPVTACFEVLRGGYPVDELLRQTLE
LLLLDSGTPPAQVQMNDLQRSAIALHMACAEKYLCDGATEAVQLLAFVANCRSVLQASS
NT seq 1080 nt   +upstreamnt  +downstreamnt
atggctcggggcgacgaccacgccactcagccgtgggtagaaaagtatcgaccaaggcga
ctggacgacgttacacagcagcacgagaccattcgcgctttgaagcaacttctgtatgga
tccggaggctccagcttgacggaaaaagtcgccagtctgccgcacctgctcttctatgga
ccgcctggaaccggtaagaccaccaccgcgcttgcgctgtgtcgcgagctcttccaaaac
atcacgaatagggaaacactgcaaaatcgcgttctagaactcaacgcgagcgatgagcgc
ggtattcgcgttgtgcgggagaaaatcaagcgcttcgcgcagtcatccatcgaggagagc
gtcgacgcacaggtgcctgggttcaaaatcgttattctggatgaagcggatgctattacc
gcagacgcccagacagctcttcgtcgcactattgaagtgcactcgcggacgacgcgtttc
gtattgatctgcaactatctgagtcgcgtgataccgccgctcgcgagccgttgtgccaag
tttcgtttcaaagcactcgaggatggtgcagtgatagcacgattagagcacattgctagg
accgagggcatggggccgctacccccggaggcatcgcgtctcctggccaaggctgcagcc
ggagacctccggcgcgccgtgaacctgctccagagctgcgccgactgggcacgcagtgca
gacggctcccagcgcgttcttgaaccggaaatggtaagcgaggccgcttgtatggtccct
gcttctgtagtagaacgattctacgatatttgcgtctcccgaaacgagccagtaacggcg
tgctttgaagtcttgcgcggcggatacccagtcgatgaattgcttcgtcaaaccctagag
cttttactgctggacagtggtactcctcccgctcaagttcagatgaacgatttacagcgc
tctgctatcgccttgcacatggcatgcgctgagaagtatctctgcgatggtgcgactgag
gctgtccagctactggcattcgttgccaactgccgaagcgtcttgcaagcatcttcgtga

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