Cyanidioschyzon merolae: CYME_CML307C
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Entry
CYME_CML307C CDS
T00175
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03030
DNA replication
cme03410
Base excision repair
cme03420
Nucleotide excision repair
cme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CYME_CML307C
03410 Base excision repair
CYME_CML307C
03420 Nucleotide excision repair
CYME_CML307C
03430 Mismatch repair
CYME_CML307C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cme03032
]
CYME_CML307C
03036 Chromosome and associated proteins [BR:
cme03036
]
CYME_CML307C
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CML307C
DNA replication proteins [BR:
cme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CYME_CML307C
DNA Replication Termination Factors
ELG1-RFC complex
CYME_CML307C
Chromosome and associated proteins [BR:
cme03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CYME_CML307C
DNA repair and recombination proteins [BR:
cme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CYME_CML307C
Check point factors
HRAD17(Rad24)-RFC complex
CYME_CML307C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
DNA_pol3_delta2
Rad17
RuvB_N
AAA_22
AAA_11
AAA_5
Rep_fac_C
AAA_16
SLFN-g3_helicase
AAA_assoc_2
AAA_14
RCF1-5-like_lid
Mg_chelatase
AAA_28
AAA_18
AAA_lid_RFC1
ResIII
Cdc6_lid
RNA_helicase
KTI12
AAA_24
AAA_30
nSTAND3
AAA_19
AAA_25
DNAX_ATPase_lid
TIP49
ABC_tran
AAA_2
AAA_33
AAA_7
bpMoxR
AAA_17
Motif
Other DBs
NCBI-GeneID:
16994727
NCBI-ProteinID:
XP_005536914
UniProt:
M1VIF9
LinkDB
All DBs
Position
12:782544..783623
Genome browser
AA seq
359 aa
AA seq
DB search
MARGDDHATQPWVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYG
PPGTGKTTTALALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSIEES
VDAQVPGFKIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIPPLASRCAK
FRFKALEDGAVIARLEHIARTEGMGPLPPEASRLLAKAAAGDLRRAVNLLQSCADWARSA
DGSQRVLEPEMVSEAACMVPASVVERFYDICVSRNEPVTACFEVLRGGYPVDELLRQTLE
LLLLDSGTPPAQVQMNDLQRSAIALHMACAEKYLCDGATEAVQLLAFVANCRSVLQASS
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggctcggggcgacgaccacgccactcagccgtgggtagaaaagtatcgaccaaggcga
ctggacgacgttacacagcagcacgagaccattcgcgctttgaagcaacttctgtatgga
tccggaggctccagcttgacggaaaaagtcgccagtctgccgcacctgctcttctatgga
ccgcctggaaccggtaagaccaccaccgcgcttgcgctgtgtcgcgagctcttccaaaac
atcacgaatagggaaacactgcaaaatcgcgttctagaactcaacgcgagcgatgagcgc
ggtattcgcgttgtgcgggagaaaatcaagcgcttcgcgcagtcatccatcgaggagagc
gtcgacgcacaggtgcctgggttcaaaatcgttattctggatgaagcggatgctattacc
gcagacgcccagacagctcttcgtcgcactattgaagtgcactcgcggacgacgcgtttc
gtattgatctgcaactatctgagtcgcgtgataccgccgctcgcgagccgttgtgccaag
tttcgtttcaaagcactcgaggatggtgcagtgatagcacgattagagcacattgctagg
accgagggcatggggccgctacccccggaggcatcgcgtctcctggccaaggctgcagcc
ggagacctccggcgcgccgtgaacctgctccagagctgcgccgactgggcacgcagtgca
gacggctcccagcgcgttcttgaaccggaaatggtaagcgaggccgcttgtatggtccct
gcttctgtagtagaacgattctacgatatttgcgtctcccgaaacgagccagtaacggcg
tgctttgaagtcttgcgcggcggatacccagtcgatgaattgcttcgtcaaaccctagag
cttttactgctggacagtggtactcctcccgctcaagttcagatgaacgatttacagcgc
tctgctatcgccttgcacatggcatgcgctgagaagtatctctgcgatggtgcgactgag
gctgtccagctactggcattcgttgccaactgccgaagcgtcttgcaagcatcttcgtga
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