KEGG   Cyanidioschyzon merolae: CYME_CMM065C
Entry
CYME_CMM065C      CDS       T00175                                 
Name
(RefSeq) Sm protein D3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CYME_CMM065C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cme03019]
    CYME_CMM065C
   03041 Spliceosome [BR:cme03041]
    CYME_CMM065C
   03032 DNA replication proteins [BR:cme03032]
    CYME_CMM065C
Messenger RNA biogenesis [BR:cme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     CYME_CMM065C
Spliceosome [BR:cme03041]
 Complex A
  U1 snRNP components
   Sm proteins
    CYME_CMM065C
  U2 snRNP components
    CYME_CMM065C
 Complex B
  U1 snRNP components
    CYME_CMM065C
  U4/U6.U5 tri-snRNP components
    CYME_CMM065C
 Complex C
  U2 snRNP components
    CYME_CMM065C
DNA replication proteins [BR:cme03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     CYME_CMM065C
SSDB
Motif
Pfam: LSM SM-ATX RBD DUF6338
Other DBs
NCBI-GeneID: 16995080
NCBI-ProteinID: XP_005536984
UniProt: M1VIK0
LinkDB
Position
13:135799..136311
AA seq 170 aa
MSGYRPAAFDLPRALLREAKNQIVSVETKNGMEYRGRLDNVSSRMNLVLSAVTVLNATGE
RTQKNRVLVRGDSIVLVVLPEALEDAPQLDVLLQVKQARKAAMHVNNTDRKSRGARRSEA
DVHERSGASTLPLPQSESQPQLKRTRVFLSGNAETVQRTKEGGDSNRRNV
NT seq 513 nt   +upstreamnt  +downstreamnt
atgagcgggtatcgacccgctgcgttcgatctccctcgagcgctcctacgcgaagcaaag
aaccaaattgtatcggtagagaccaaaaatggaatggagtaccgggggcgcctggacaac
gtgagctcgcggatgaacctggtgctcagcgcggtgacggtattgaacgcgactggcgag
cgcacccaaaaaaatcgtgttctcgtccgtggtgacagtatcgtgcttgtagtgctcccg
gaagcactagaagacgcaccacagctggatgtcctattacaggtaaagcaggcccggaag
gcggcgatgcacgtgaacaacactgaccgcaagtcacgtggagcgcgtcgttccgaggca
gacgtacacgagcgttcaggtgccagcacgctgccactaccccagagcgagtcgcagccg
caactcaagcgaactcgagttttcttgagtggtaatgcggagaccgttcagcgaaccaaa
gaaggaggcgactcgaaccggcggaacgtgtga

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