Cyanidioschyzon merolae: CYME_CMM102C
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Entry
CYME_CMM102C CDS
T00175
Name
(RefSeq) probable ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cme
Cyanidioschyzon merolae
Pathway
cme03420
Nucleotide excision repair
cme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYME_CMM102C
03430 Mismatch repair
CYME_CMM102C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cme03400
]
CYME_CMM102C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYME_CMM102C
DNA repair and recombination proteins [BR:
cme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYME_CMM102C
MMR (mismatch excision repair)
Other MMR factors
CYME_CMM102C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_11
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
16995105
NCBI-ProteinID:
XP_005537010
UniProt:
M1V8V2
LinkDB
All DBs
Position
13:234163..237066
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AA seq
967 aa
AA seq
DB search
MGGAFAAYAMTQALILPGSSAFIKIPPYANNRTTSTYSNGASCVASRRHCRFLGAGSGRS
RALTAFLVKQQCCRCVDSLRRAQTAKRSPGVAAIRLATESPEQDPVLDWLRKELNDEQFA
AATAPVDAPVLVMAGPGSGKTRVLTYRMVYLIIKELFRARHLLAVTFTNKAADEMRARVI
DLLKSRQGTEVESSHSVPTVGTIHSACSRILHRFGAVMGISSKFNIYSESDAKRLLHRIL
EENGETMIDPKKIALFAALLSEMKQEQFCAEFGYEPSPSRSPAYDARGITAYMVERAKTL
LPVYQSELRRLGALDFDDLILEAGRLLRNHPAIRLELQKQWQYIMVDETQDTSQAQYHVI
RLLAERKRETEKYFPLFLVGDPDQSIYGWRGADMHAVRRFRDSLPETRVYLLENNYRSTK
AIGDLAQYVIQQDRERIHPEKRMRTQLEGEHPVRLVFCRNSKSEAEFVVKQIRELVARHK
LSGRDIAIMYRTNVQSRTLEEACIHAGVPYVLVGGLPFYERREVADMLACLKLLLHEGDT
ASFERVLSFAVSGIGKRTTAALYEWAKHLNCTPIAALRALSNVDADTPIVSKAIPSVPRS
LPVHETPAVDENASNGTRGAAELETTPTLTDEQVAMLGVTSRKRKILLKFLEMYERWKRL
LRTPVAEMSRRYYVLPLMIKTIFADTQYEEYVRKQALHGPAVNEETSALRVQERLENVVE
LARAASTAEELCLKRGAQTAGDVLVTFLHEVALVHGANRDENTPKDAFGCVNLMTLHASK
GLEFEAVFIVGMTESLLPHKLCRTRESQIAEERRLAYVGLTRAKRHLTITWYPNGSEWLS
RFLLDAPDELVSRHCARDLMKGRLDPIPREEYTLRCKQAHAGSKEPVRIGDIDVLGEVKA
RSRAAESKRARVQANADSKLAAGVFVRHSKYGKGIVVKKLDGTPLVVVRFFEQRGTKAVP
GNFLERL
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcgctttcgctgcatacgccatgactcaggcgctcattcttcccgggagctct
gcttttatcaaaataccaccgtacgcgaacaaccgcacgaccagtacgtactcgaatgga
gcaagctgcgttgccagtcgccgccactgtcggtttttgggagccggctcaggccggagc
cgcgccttgactgcgtttctggtgaagcagcagtgctgtcgctgcgtcgacagtttgcgg
cgcgcacagacagctaagcgctcacctggtgtcgctgcgatccgtctcgcgaccgagtcc
ccggaacaggaccctgttcttgactggctccgcaaagagctcaacgacgagcagtttgca
gccgcgacggcgcccgttgacgctccagttttggtgatggctggccccggatcaggcaag
acgcgggttctcacttaccgaatggtgtacctcatcatcaaagaactcttcagggcaagg
cacttattggcggttacgttcacgaacaaggctgctgatgagatgcgagcacgcgtgatc
gacctactaaagtcgcgacaaggcaccgaagtggaatcctcgcacagcgttcccactgtt
ggtacgattcattcggcctgttcgcgcatcttgcatcggtttggcgcagtcatgggcatt
agctccaagtttaacatctattccgagtcggatgctaagcggctgctgcacaggatcctc
gaagaaaatggcgaaacgatgattgacccgaagaagattgcgttgttcgccgcgcttctc
tccgagatgaagcaggaacaattttgcgcggagtttggttacgagccgtcgccctctagg
tcgccggcctatgatgctcgtggcatcactgcatacatggtggaacgcgccaaaaccctc
cttccggtgtaccagtcggagctgcgacggcttggggcactcgactttgatgatttgatc
ctggaggcgggacgcctgcttcggaatcacccggccattcgtctggagctccagaagcaa
tggcaatacatcatggtagatgagactcaggacaccagccaagctcagtatcatgtaatt
cgattactggctgaaagaaaacgtgaaacagagaagtatttcccgttgtttcttgtgggt
gatcccgaccaaagtatctatggatggcgcggggcggacatgcacgctgttcggcgtttt
cgggattcgctaccggaaacccgtgtctacctattagagaacaattaccgctcgacgaaa
gcaattggagatctagcacaatacgtcatacaacaggatcgtgaacggatacatccagag
aaacgcatgcgtacgcagctagagggcgaacatcccgttcgcttggtcttttgtaggaac
agcaagtcggaagctgaattcgtggtcaagcaaattcgagaactcgtcgcacgccacaag
ctctctggtcgagatatcgccatcatgtaccgaacaaacgttcaaagccgtacgctcgag
gaagcctgcatacatgccggtgtgccgtacgtcttggttggcggtctgcccttctacgag
cggcgcgaggtcgcagacatgctggcctgtttgaagctgctcctccacgagggcgataca
gcaagctttgaacgggtattgagctttgcggtctccggcattggcaaacgaacgaccgcc
gcattgtacgaatgggcgaaacacctgaactgcacaccgatcgcggcacttcgggcgctc
agcaatgtcgatgcggatacaccaatcgtttccaaagcgataccgagcgtaccgcgctcg
ctgcccgtgcatgaaaccccagcggtggacgaaaacgcctccaacggaacccggggtgca
gctgaactcgagactaccccgactttgaccgatgaacaggtggccatgctgggtgtcact
tcgcggaaacgcaaaatcttgctcaagtttttggagatgtatgagcggtggaagagatta
ctgcgaacacctgtggccgagatgagccgcaggtattatgtgcttccactcatgattaag
acaattttcgcagacacgcaatacgaggaatacgtccgcaagcaagcgctccacggaccc
gctgtcaatgaggagaccagcgctcttcgcgtccaggagcgtctagagaacgtcgttgaa
ctcgcacgagccgcctccacagccgaggagctctgcctgaagaggggtgctcaaacggcc
ggcgacgttctcgtgacctttctgcatgaggttgcacttgtgcatggcgctaaccgcgac
gagaacaccccgaaagatgcattcggctgtgtgaatctcatgacgctgcacgcgagcaaa
ggtcttgaattcgaagcagttttcatcgttggtatgacggaaagtcttctgccacacaag
ctgtgtcgtacccgagagtcacagatcgcggaggaaaggcggctggcatatgtcggcttg
actcgcgccaagcgccacctgacaatcacctggtacccaaatggctccgaatggctctcc
cggttcctcctggatgcacctgacgaactcgtcagtcgacactgcgcccgggatctgatg
aaaggtcgcctggaccccattccacgtgaagaatatacgctgcggtgcaagcaagcacac
gcgggcagcaaggagccggtacgcatcggtgacatagacgtactgggagaagtgaaggcc
aggagcagggcggcggaatcgaaacgagcacgtgtccaggcaaacgcggactccaaacta
gccgctggggtttttgtaaggcattcaaaatatggcaaaggtattgttgtcaagaaacta
gacggtacaccgctcgttgtcgtgcgattcttcgagcagcgcgggacaaaggctgttcct
ggaaacttcttggagcggctctga
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