Cyanidioschyzon merolae: CYME_CMN151C
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Entry
CYME_CMN151C CDS
T00175
Name
(RefSeq) probable ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cme
Cyanidioschyzon merolae
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cme03016
]
CYME_CMN151C
Enzymes [BR:
cme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CYME_CMN151C
Transfer RNA biogenesis [BR:
cme03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CYME_CMN151C
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
16995369
NCBI-ProteinID:
XP_005537290
UniProt:
M1V973
LinkDB
All DBs
Position
14:complement(381019..383805)
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AA seq
928 aa
AA seq
DB search
MWVSLATHTRVSFVTVPTCGWTSKARTPRVSASTWCSVPLGRSRRKPRARLVATAETAAA
PDAHAAPLPGTVQDSEFERAEACSVVEVFHDRAVHIGVLRTTPAEAACATSFRVHLVSAD
NQEVSVAPDQVIANWSETLVPPLLFEELSTAGEQPEAWLPPVRFSQTRLQHAWDTARLWL
QPHSTESWLALQSADRLGILALLSEGLYELHQEVSCRGARRGGPFTSAVELAARYQLRLR
ERFRRRLWPADETTSPVAKSLCDPFVLRILAAITLGSDNFRFRRVPRYGGGWRALPEPMV
RARIVESFCERVHATRQSLDRTWHPEHLAVLRELEMLAASRSEHRRNLEPSLRTKRQGMS
APSTRLERLYPLAAAVCRRVASEVSPNTAISILVKLGQWTLSETSKESASTPPATLKRRP
NVCPEPKIGQKIIAAFPDAVMTAARALRSRILSGRTRNQRSVWSHQFAFCVDSSSARILD
DAFSVEIEQRCDPSSGASGHRPGDLQVTWHVHIVDIGRWLPAGHPVDQIACQRAQSLYLP
GRPLHLLPPPLANAASFSEHLATDAITVSLRFRERSNDQHTGSDDLGAIEWFTVRRSVIP
PVQRISYEELDRLILSNRRVRASSSSAAAAAAAAAAASASASASSPTDTSTETLLQRASN
PLTILQKALNSAALEQRMRARMHARQRRNAGRIARVAHRRDGSLAVAEFALSPGYCLVDA
LLAAASEALIRFAAQHKIPVPVTRWTRVQNTELGTLAAQKVTASEPNAVQAYRPQRFGTA
PLRRYLDLMTLRQISLYLEYGAEAPLLTRAQVARIAAQVQRNASAGMQKVVASRQSLMLD
VLAERQSQVQRLGPGELVLNGLVASVSSNGRTALIILEDDQMEATVTLERSQRLRIGERR
AFRLVRLDRTQCGARAIQLALVVDSVSV
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtcagtcttgcgactcatacgcgtgttagctttgtcacggtaccgacttgtggc
tggacatcaaaagcacgcacacctcgagtaagtgcgtcgacctggtgttcggtaccgctg
gggcggtcgaggcggaagccgcgcgcccgactggtagcaacagcagagacagcagcagct
cctgatgcgcacgctgctccgcttccgggtactgtccaggactccgagtttgaacgtgcg
gaggcttgtagtgttgtggaggtttttcacgaccgagcggtgcacattggtgtgttgcgc
acgacaccagctgaggcagcgtgcgcaacgagctttcgagttcacctggttagcgccgat
aaccaggaggtaagtgtcgcccccgaccaagtcattgcgaactggagtgaaactctggta
ccgccgttgctgttcgaggagctcagcactgctggtgagcagcctgaagcgtggctacct
ccagtgcgtttctcgcagacgcgtctgcagcacgcctgggataccgcccgactctggctg
caaccgcactcgacggagtcatggctcgcactccagtctgcggaccgtctcggaatcctg
gcgttgttgtcagaggggctgtatgagctccatcaggaggtgagttgtcgaggcgctcgc
cgcggcggtccattcacatccgctgtcgagttggcagctcgataccagttgcgtttgcga
gagcgttttcgtcgtcgactttggcccgcggatgagaccacttcaccggtagccaagtcg
ctgtgtgatccgttcgtattgcgaatactcgcagcgataacgctcgggtccgacaatttt
cgcttccgacgggttccccggtacggtggcggctggcgagcgctacctgagccgatggta
cgcgcacgtatcgtagagtctttctgtgaacgtgtacatgcaacgaggcagtcactggat
cggacatggcatccggagcatctcgcagttttacgcgagctggaaatgttggcggcctct
cgctccgagcatcgccgcaacctcgagccgtcgcttcgcacgaaacggcagggaatgtcg
gcgccgtcgacacgactggagcgcctctatcctttggcggctgcagtttgtcgtcgggtc
gcttcggaggtctcaccgaacacggctatctctattttggtgaagctcggtcagtggacc
ctctcggagacgtccaaggaaagcgccagcacgccgcccgcgacactgaagcgccgaccg
aacgtatgccccgagcccaagatcggacaaaagatcatcgctgcttttcctgacgcagtg
atgactgcggctcgggcactacgtagccggatcctgagcgggcgtacgcgaaatcagcga
agcgtctggagtcaccagttcgcgttctgtgtggattcctcatcagcgcgaattctggac
gatgctttctccgttgagatcgagcagcgctgcgacccgtcgtcgggggcatcgggtcat
cgcccgggcgacttgcaggtgacctggcacgtccatatcgtggatattgggcgctggcta
cctgcaggccacccagtagaccagattgcctgccagcgagcacagtcactgtatctgccg
gggcgacctctgcacctgttgccgccaccgttggcaaacgcggcctctttctcagagcat
ctggcgactgacgcgatcaccgtatcactgcgcttccgtgagcgcagcaacgaccagcat
accgggtccgacgacctcggcgccatcgaatggttcacggtacgtcgaagtgtgataccg
cctgtgcagcgcatatcatacgaggagctcgatcgtctgatcctgagtaatcgacgcgtg
cgggcatcatcatcatcagcagcagcagcagcagcagcagcagcagcagcatctgcatct
gcatctgcatcgtcacctacagacaccagcaccgaaacactgctgcagagagcgtcgaac
ccgttgacaatattacagaaagcgctgaattcagcagcgctggagcagcgcatgcgtgca
cgcatgcatgcgcgtcaacgccgcaacgccgggcgcattgcgcgggtggcgcatcgacgc
gacggcagcctggctgtagcggaatttgcactctctccgggatactgcctcgtggatgcg
ctactcgctgccgctagtgaggcacttattcgatttgctgcacagcacaagatccctgta
cccgtcactagatggacacgagtccagaacacggagctggggacgctggcggcgcaaaag
gtaaccgccagtgaaccaaacgcagtgcaggcgtatcggccgcagcgtttcggcactgca
cctctccgtcgatacctggacctcatgacactgcgtcagatctcgctctatcttgagtat
ggggcagaggcgccgctgctgaccagagcacaggtagcacgcattgctgcgcaagttcag
cgaaatgcgtctgcggggatgcagaaagtggtggcatctcggcaatcgctcatgctggat
gtacttgctgagcggcagtcacaagtgcagcgtctcggtccgggggaacttgttttgaac
ggcttggttgcatccgtgtcgtcgaatgggcgaacggcgctcatcattctggaggatgat
caaatggaggcgacggtgaccctagagcgcagtcagcgccttcgtattggcgaacgccgt
gcgttccgtctggtacgcctcgaccggacgcagtgcggtgcacgagcgatccagttggca
ctggttgtcgactcggtgtcggtttga
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