Cyanidioschyzon merolae: CYME_CMO023C
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Entry
CYME_CMO023C CDS
T00175
Name
(RefSeq) similar to rRNA biogenesis protein; rrp5 homolog; multiple S1 rna binding domain protein
KO
K14792
rRNA biogenesis protein RRP5
Organism
cme
Cyanidioschyzon merolae
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cme03009
]
CYME_CMO023C
Ribosome biogenesis [BR:
cme03009
]
Eukaryotic type
90S particles
Other 90S particles
CYME_CMO023C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
S1
HAT_PRP39_N
Suf
TPR_14
TPR_19
Motif
Other DBs
NCBI-GeneID:
16995503
NCBI-ProteinID:
XP_005537454
UniProt:
M1VJE1
LinkDB
All DBs
Position
15:57715..63831
Genome browser
AA seq
2038 aa
AA seq
DB search
MEVEQAATMPQVANGGDFPRGRDDDLPVTAAAAVTSDRRTRQTGTKRSKRASTSVIRKPQ
KINLSPLVRSERAKVPAWLQVGDLQPGTLLLGCVVTVRPERAVILLPYGIWGTCPLAGTE
ALERSASGAPTASVAVAATLKLQPQTIVRACVLSRPLASHELEPERRATHQSGKRERSIH
LSVDPRHVNRGLGLSERLADYGPIQVRLSLPLDDAQKRFTVEALAEDPSQDRRLALQVSG
AGATASNDTGMVCWASLASWNEQRRTGILQNDPKMVAEAFTRGHWTLEQLSPGMLVEAQV
LSRDERFAIVRFLQVFEGILEWFHLDQWEDFARLEPDAILRVRLIYIDCRRRRIMVTART
SLVNTLTLPLLVSAARRYHRGSFVESLRVFKIENGRGIWLRKDKEAIYFFADRKMLSDER
FSRMERLFPLGTVVPRARVVSHMAMEGIVRVSLKPSLLERKFMDVSELEPGALVRCRVLG
WISVTPATATPSLRVSIEDCLSGEIPLELLTDVPVQWRRLEKKFPPGSQLRCRVWLVYPK
RKQVLLTARRSLVDSDLPILAGWDTMQQGQVYAGILGPRDPSGAYRVLFYQRFTGILPAN
LGTEMASFKSGQVIRVRVERIHSRRAKQLLVSLDNSAVTATPMAAAAAAAASEQQSDQGR
LRPGTLVRIQSAFRDQVGRILALVYIDEPRAKDAGAQSAKRTWLVLLPRQHLTDYPMFQK
SWAADAGLAALCDEVALVIDAGHTGDSSLPLISHRWSLCRAAACGLLDDGAVERSAPGSI
GVGYVERIGAAQAYAVVRLGLSSRRVHVQRALLADRFVDQSTSVLLEGQLVLYSVRNGSR
YSLRYSDVQPALETEPYREFFQEMRSLVPLVRELARLWRAHEASQSLGLSLPLPGTLVRG
RVLYSGDDRMDMEVQHEQVIYRGVVGSYHFVDTQAGEQAPTASRETSTTRAAVGQLCTAL
VLWMDPLAKTMVLSRKASLLKTAPLPWSDAQCLTATDSTVSSSLGGCTRVQKAQVLAVYG
QVAVLLAQARLAFMSTLDINGRGTERPVHVGQQLTVTARTANATARPPPAPAASTPAADD
ENNGAKNGDDAAEWPAWMRAMLRASVRPAAPSTETAAQSAGVQTKRQVPQPLSRPPVRIG
DVVTDAEVTAVHSFQVHVRWSDGQTGRVHIINVENEGAFRELQVGQLLPPARIVAQRRPR
QWELSLRQRDLEATDVLSLDSLPQTGDLVERAVVKTTDLNAQGDVLAVWLYVRPGLVARL
SRLEATPRVLDESWVPGRFVQGLRVLRADADRKRYDLTTTDPLLAGQCITGARVRSVHPV
DGIVRVQLPRGQMGVLFIGCLPYEDPKDPFRTLQGIQKLDVYLVEDWIPSKQVPVTAIPE
RQPLRWAQLHRGDVVGAFVRHVDQAGVFLNLAPGLVARCLLRDLAEGFVPDPVQVYPVGM
HVQAMITDCGGSDARHVRVSLRAAQQQQQQQQQRAVAAEQAPTSAVHIGGVYLGRVRRVV
PFGIFVELLTDRTDEGDAQVLATALCHRSELVEQGPWPLPEELPQRFRVGQHLPVLVVAR
DAAGRLSLSAKASLIKEALATQCASAKSIDEVDLGAGFTPALKDVIVSATEDENVAHEPI
SRSGNCDSPASAATKYAASSLMGSERSPQQRDAMACLGSNTTALDHLEENTETEEMEHTA
HQPNGVYAAVNGASAGTLPFLAIPSETELVREDADTHASKDWSRSVDEASGAARAPLDDE
ALERGERALVESLHKPQTAADFERALLGRPNDPQLWIGYMALHLATGNELEARGIAERAL
QTIHYREYQARMRVWIAYLNLERSANAAADPLESDIFRRALQNCDSLQLHLRLARSLEAA
QEVKLAGRVYEHACRRHGHQTASVWIAYGAFCFLRSSQEVLGRTLLERALRALMDPAQHV
QCILKFATFEFKGSGEPERGRTLLENLIQAFPKRLDFWNVYLDMELMLLRQERGKLELVR
RLFRRCTALPNLSLKQAKHFFKRYLEVERAFGDASSVEHVKQAARAYVAQRTGEAPQR
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgaacaggcggcaacaatgccccaagttgccaatggaggggattttcctcga
ggtagagacgatgatctgccggttaccgcagctgccgccgtcacctctgacaggcggact
cgacaaaccggaacgaaacggagtaaaagagcgagcaccagcgtgatccgcaagccacaa
aaaatcaacttgtcaccgttggtgcgctctgagcgggcaaaggttcccgcgtggctacag
gtcggcgacctccagccagggacactgctgctgggttgcgtcgtcaccgttaggcccgaa
agagcagttattctcttgccttacggcatctggggcacttgtccacttgccggcacagag
gcgctggaacggagcgcctcgggagctccgactgcaagcgtggcggttgctgccaccttg
aagctccaaccgcaaacaatcgtgcgagcctgcgttctcagccggccacttgcgtcccac
gaactagagccggagcgcagagcaacacatcagagtggtaaacgcgaacgaagcatccat
ctgagcgtggatccgcgtcacgtgaaccgcgggttaggtctgtcggagcggctcgcggac
tatggtcccattcaggtgcgactgtcgctcccgttagatgacgcacagaagcgtttcact
gtcgaggcgctggcagaggacccgtcgcaagatcggcgtcttgcgttgcaggtcagcgga
gcgggtgcaactgcttcgaatgatacgggaatggtgtgttgggcgtcgctcgcatcatgg
aacgagcaacgacgtacaggcatcctacagaatgatccgaaaatggtcgcagaagcgttc
acacgaggccattggacgctcgagcagctgagtcccggaatgcttgtggaggcacaggtt
ctatcacgtgacgagcgcttcgccatcgtgcgcttcctccaagtctttgaaggcatcctt
gaatggttccatttggatcagtgggaagactttgctcgactcgagccggacgccattctt
cgtgtccgcctgatttacatcgattgtaggcgtcgtcggatcatggtgaccgcccgtact
agtctcgtgaacacgctgactctgccgctattggtgtctgctgcccgcaggtatcaccgc
ggctctttcgttgaaagtcttcgtgtgttcaaaatagaaaacggacgcggaatctggctc
cgcaaggacaaggaggcgatttactttttcgcggatcgcaagatgctcagcgatgagcga
ttttctcgaatggaaaggctgtttccgctgggcacagtcgtaccccgcgcccgagtcgtg
agtcacatggcgatggaaggcatcgtgcgcgtgagtctgaagccgtctcttcttgaacga
aagtttatggacgtttcagagttggagcctggtgccttggtgcgctgtcgggtcctcgga
tggatatccgtgaccccggcgacagcgactccttcactgcgcgtctccattgaggactgc
ctctccggtgaaattcctctggagctgctcaccgatgtaccggtccagtggcggcgacta
gagaagaagtttccaccgggctcgcaactgcgatgccgggtctggctcgtctaccccaag
cgcaaacaagtgcttttgacagctcgccgatcgctcgtggactcggacctgccgattctc
gctggctgggataccatgcagcagggccaagtatacgctggtatcctggggccgcgcgat
ccttcaggcgcataccgtgtgcttttctatcaacgcttcacaggtattctgccagcaaat
ctaggaacggaaatggcctcgttcaagtccggccaagttattcgcgtccgagtggaacga
atccattcaaggagggcgaagcaactgctggtgagtctagataatagtgcagtcactgcg
acgccgatggcggcagcagcagcagcagcagcatcagagcagcagagcgatcaaggcagg
ttacgtccaggcacccttgtgcgtattcagagcgcctttcgcgaccaggtagggcgcatc
ctggctctcgtgtacatcgacgagccccgcgcgaaagacgctggtgcgcagtctgcgaag
agaacttggcttgtgctgcttcctcgccagcatctcaccgattatccgatgttccagaaa
tcttgggccgctgatgccggtctagccgcactctgtgacgaagttgcgctagtgatcgat
gctggtcacactggagacagctctctgccgctcatctcgcatcgctggtcgctctgtcga
gcagcagcttgtggactgctggatgacggggcggtggagcgatctgcacctggttccatc
ggagtcgggtatgtggagcggataggtgccgctcaggcctacgctgtagtgcgtctgggg
ctatcgtcgcgacgggttcacgtccagcgagccctgcttgccgatcgcttcgtggatcaa
tccacgagcgtgcttctcgaaggccagcttgttctctactccgttcgaaatggatctcgg
tatagtttgcgctacagcgacgtccagcctgcgctcgaaacagagccgtatcgcgaattc
ttccaagagatgcgctctctggtgccgctcgttcgagaactagcgcgactgtggcgagca
catgaagcatcccaatccctgggtctgagcttgccgctacccggcacgcttgttcgtggt
cgcgtgctttacagtggcgacgatagaatggatatggaggttcagcacgagcaggtcatc
tatcggggagtcgttggatcgtaccattttgtggacacacaggctggcgagcaggctcca
actgccagccgagaaacatccacaactcgtgccgcagtggggcaactctgcactgctttg
gtgctctggatggatccacttgccaaaacaatggtattatcacgcaaagcgagcctgttg
aaaacagcaccgttgccatggagcgacgctcaatgcctaactgcgaccgatagcactgta
tcgtcgtcactaggcggatgtactcgagttcaaaaggcgcaggtcttggctgtctatggc
caagttgctgtacttttggcccaagctcgcctcgcgttcatgagtaccctcgatatcaat
ggacgcggaacagagcggcctgtccatgtcggacagcaactcacggtaactgctagaacg
gcgaacgcaacagcacgaccgcctcctgcacctgctgcttcgactcctgctgctgacgac
gagaataacggagccaagaacggtgacgacgctgcagagtggcctgcctggatgcgcgcc
atgttgcgtgccagtgtgcgacctgctgctcctagtacagagactgccgctcagagcgcg
ggcgttcagacgaaacggcaagtgccacaaccgctatccagaccgcctgtacgtatcggt
gacgtcgttacggacgccgaggtgacggctgtgcactcgtttcaggtacatgtgcgctgg
tccgatggccaaacaggtcgcgtgcacattatcaacgtagagaacgagggcgcctttcgg
gagcttcaggtcggccagttgctgccgcctgctcgcattgtcgctcagcggcggccgcgg
cagtgggaactctcgctgcgtcaacgcgacctcgaagccaccgatgtattgtcgttggac
tcgctgcctcaaactggcgaccttgtcgagcgagcagtggtgaagaccaccgacctcaat
gcacagggtgacgttttggctgtatggctctacgttcgaccggggctcgttgcccgcctc
tcacgcctggaggctacaccgcgagtgctcgatgaaagctgggtacccggacgctttgtg
cagggtctacgcgttctccgcgcggatgctgatcgcaaacgatatgacttgaccacaacg
gacccgctgcttgctggccagtgcatcactggggcacgagtacggtcggtgcatccagtg
gatggtatcgtgcgggtgcagcttccgcgagggcaaatgggggtcctttttatcggctgt
ctgccctatgaagaccccaaggatccattccgaacgctgcaaggtattcaaaaactggat
gtttacctcgttgaagattggattccttccaagcaagtgccggttaccgcgataccggag
cgtcaaccgctccgctgggcgcaactccaccgcggtgatgtcgtcggtgcttttgtgcgg
cacgttgaccaggcgggggtctttctgaaccttgctccagggctagttgccaggtgccta
ttgcgcgatctcgcagagggctttgtgcccgaccctgtccaggtgtatccagtcggtatg
cacgtgcaagcgatgatcaccgactgcggcggcagtgacgcacgccacgtacgcgtctcg
ttgcgagcagcgcaacaacaacaacagcagcagcagcaacgggccgttgcagcggagcag
gcaccaacgtcagcggttcacatcgggggcgtgtatttggggcgcgttcgtcgcgtcgtt
ccgtttggtatctttgtggagctgctgacagatcgtacagacgagggcgatgcacaagtg
ctcgctacggcgctctgtcatcgaagtgagctggtagagcagggaccatggcctctgccc
gaggagcttccacaaaggtttcgggtcggtcagcacctgccggtgttggtggtagcgaga
gacgctgctggtcgcttgtcactatcagcgaaggcctctttgataaaggaggcgttggct
acgcaatgcgcctctgcgaagtccatcgatgaggtggacttgggtgctggtttcactcca
gcgctcaaggacgtcatcgtgtccgccacagaggacgagaatgtcgcgcacgaaccgatc
tctagaagcggtaactgcgactcgccagcatctgcggctaccaaatacgcagcttcatct
ttgatggggagcgaacgatctcctcagcagagggatgcgatggcgtgtctgggatcgaac
acaacagcactcgatcatctcgaggagaatacggagacggaggagatggagcacactgcg
caccaaccgaatggcgtctatgcagctgtgaacggtgcatcggcgggtacgcttccgttc
ctcgcgataccaagcgagacagaactggtacgcgaggacgcggacacacatgcatccaaa
gattggtcacggtctgtcgatgaagcatctggggctgcaagagcacctctcgacgatgaa
gcgctagaacgtggcgaacgtgcgctcgtagaatcgttgcacaagccacagaccgcagca
gactttgagcgcgcgctactggggcgccccaacgatccccagctctggatcggctacatg
gccttgcatctcgctaccgggaacgagcttgaggcaagaggcatcgcagagagagctctg
caaacaattcactaccgcgagtaccaggctcgcatgcgtgtgtggattgcgtacctgaac
ctggagcgttccgcaaacgctgccgcggatccactcgagagcgacatctttcgccgagcg
cttcagaactgtgatagcttgcagctgcacctgcgcttggcgcgttccctagaggcagct
caggaagtcaaactcgctggccgagtctacgaacatgcatgccgacgacacggtcaccag
acggcgtctgtttggatagcgtatggcgcattctgtttccttcgaagctcacaagaggtc
ctggggcgcacgcttctagaacgagcgctacgagcactgatggaccccgctcagcacgtt
cagtgcatcctcaagttcgctacgtttgagttcaagggttccggtgaacctgaacgcggg
cgaacgctattggagaacctgattcaggcgttccccaaacgattagacttttggaacgtg
tacttggatatggagctgatgcttttacgccaagaacgcggcaaactcgaactcgttcgc
agattgtttcgtcgatgcacagcgcttcccaatcttagtctgaaacaggccaaacacttc
ttcaagcgatacttggaagtggaacgagcatttggcgacgcgtcttccgtcgagcacgtg
aagcaggccgcgcgcgcctacgttgcccagcgcacgggcgaggcgccgcagcgctaa
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