Cyanidioschyzon merolae: CYME_CMO036C
Help
Entry
CYME_CMO036C CDS
T00175
Name
(RefSeq) probable ATP dependent RNA helicase
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
cme
Cyanidioschyzon merolae
Brite
KEGG Orthology (KO) [BR:
cme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cme03041
]
CYME_CMO036C
03009 Ribosome biogenesis [BR:
cme03009
]
CYME_CMO036C
Enzymes [BR:
cme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYME_CMO036C
Spliceosome [BR:
cme03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CYME_CMO036C
Ribosome biogenesis [BR:
cme03009
]
Eukaryotic type
Pre-60S particles
Helicases
CYME_CMO036C
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdhD
ResIII
Motif
Other DBs
NCBI-GeneID:
16995525
NCBI-ProteinID:
XP_005537464
UniProt:
M1VJE8
LinkDB
All DBs
Position
15:87295..89406
Genome browser
AA seq
703 aa
AA seq
DB search
MFDTENGIVYTIEEADPEQLSSTIEQESDASSASELSFAAEFFDWTGPEALVENAASRRR
SESEQARVDRDPRHETPEHRANHHVTDSGEGTKPDSNGTDAHTALATHDRLKPLEKRVHA
ASATKHSSPEAKVDTVRQSESWAALALSPRMLRVVESLGWMQPTPIQAQAIPVALAGRDV
LGSAVTGSGKTAAFLIPIIERLYRAQRADGVRFAADASQTAAIRVLIVLPTRELAVQCHA
VLEAICDRTARESARRMKQGVAKFVGTPEQTRLRSVLLVGGLALKPQELALRHVPDIIIG
TPGRIIDHARNAPNFTLDDVEILVLDEADRLLQMGFMDELREVVRLCAASAPYRQTMLFS
ATLDAGVEELARFALAPDRVVTVRVDATFDLVGTLVQEFVKLQMPEVLVEPAQDTRDTLT
HAEQVVQTERAALLLALCSRSFTRRVIVFFARKRTAHLFKIIFDLVGLRAAELHGNLTQA
QRLDALEAFRTCTNADFLLCTDLAARGLDIHGVETVLNYELPKDIREYVHRVGRTARAGK
HGRAVSIFQQTDRKERHLLRRLREQARRYRVDALRGDAPVPAPVLLERRIPATVIREWRD
RLHSLLDSVREKLRQEREHRELERAERLERKAHNLLIHEQEIYARPPRTWFQSKAERKRA
QMVDQEPASKERSERSNSHKHDKVRKRKLVTATNRGAHNRSRM
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatacggaaaacggcatcgtctataccattgaagaagccgatcctgaacagctt
tcgtcaacgatagaacaggagagcgatgcctcatcagctagtgaactctccttcgctgca
gagtttttcgactggacaggtccggaggcgctagtagagaacgctgcctctcgtcgaaga
tcggagtctgaacaagcacgcgttgaccgggacccacgccacgaaactcctgaacacaga
gctaatcaccacgtcaccgattctggtgaaggcaccaagcctgacagcaacggcaccgat
gcgcatacggcgctcgctactcatgatcgtctgaaaccgcttgagaaacgcgttcatgct
gctagcgctacaaagcattccagcccagaggcgaaagttgataccgtccgacaaagcgag
tcttgggcggcgcttgcgctctcgcctcgcatgctacgggtcgtcgagtcgctgggctgg
atgcaaccaactcctattcaggcccaagcgataccggttgcactcgctggacgagatgtg
ctcggatctgctgtaacgggctccgggaagacggcagccttcctgatccccattatcgag
cgtctgtatcgggcgcagcgtgccgatggcgtacgcttcgccgctgatgcctcacagact
gcagctatacgcgttcttatcgtcttaccgactcgtgaactcgcagtccagtgtcatgcg
gtgcttgaggcaatttgcgatcgtacggcgagggaaagtgcacgccggatgaagcagggc
gtcgcaaagttcgttggcacgcccgagcagacgcgccttcgctccgtgctcctagtcggt
ggactagcgctgaaaccgcaggaactcgcgctgcgccatgttccagatatcatcattggt
accccggggagaatcattgatcacgctcgaaacgctccaaacttcactctcgatgacgtt
gaaatcctggtactcgatgaagcagatcgattgctgcagatgggcttcatggatgaactg
cgagaggtggttcgactatgcgcggcgagtgcgccctatcgacagacgatgctgttcagc
gcgacactggacgctggtgttgaggaactggctcgtttcgcgctcgcgccggatcgagtt
gtaacggttcgcgtggatgctacgtttgatctcgttggaacgcttgtccaagagttcgtg
aaactgcaaatgcccgaagttctcgtggagccggcacaagatacgcgcgataccctgacg
cacgccgagcaagttgtgcagactgagcgcgccgcgttattgctggcgctctgttcccgc
agcttcacccgccgagtcattgtttttttcgcccgcaaaaggactgcacatctcttcaaa
attatctttgatctcgtcggactacgtgccgcggagttgcacgggaacctaacccaggcg
cagcgccttgatgcattggaggcctttcgcacctgcaccaatgcagattttctgctctgc
accgatctcgcagcgcggggcctcgatatccacggggtagaaacggtgttgaattatgag
ttgccgaaagatattcgggaatacgtccaccgggtgggccgcactgcacgcgcgggtaag
catggtcgggcagtctcgatattccaacagacagaccggaaggagcgtcatctgctgcga
cgcttgcgggagcaggctcgacgatatcgggtagatgctctccggggagatgcacctgta
cccgctcctgttctccttgaacgtcgaatacctgcaacggtgatccgggagtggcgtgat
cggctgcattccctcctggatagcgttcgagagaaactgcgacaggaacgggagcatcgg
gagctcgaacgtgctgaacggctcgagcgaaaagcgcataatcttctcatccatgagcag
gagatatatgcacgaccgccgcgaacttggttccagagcaaggccgaacgaaaacgtgcg
cagatggttgatcaggaacctgcctcgaaggagcgttctgaacgttctaattctcacaaa
cacgataaggtgcggaagcgcaagctggtaacagcgacaaatcgaggtgcgcacaaccgg
agtaggatgtga
DBGET
integrated database retrieval system
